HsaEX0020848 @ hg19
Exon Skipping
Gene
ENSG00000197635 | DPP4
Description
dipeptidyl-peptidase 4 [Source:HGNC Symbol;Acc:3009]
Coordinates
chr2:162902042-162903516:-
Coord C1 exon
chr2:162903425-162903516
Coord A exon
chr2:162903212-162903315
Coord C2 exon
chr2:162902042-162902122
Length
104 bp
Sequences
Splice sites
3' ss Seq
CTGTTGGACTCTTTCTGCAGCAT
3' ss Score
7.69
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
ATCATGAATATCTCTACAAACAAGAAAATAATATCTTGGTATTCAATGCTGAATATGGAAACAGCTCAGTTTTCTTGGAGAACAGTACATTT
Seq A exon
CATATGGCAAAGTGGATCTTTCTCTCCTTCTTGAAATGCTCCCTGCCTTGGCTACTTTTTAGTCTCCTTTGACGATTCCTCTTCCTCTGCCCATATTTTTAAAT
Seq C2 exon
GATGAGTTTGGACATTCTATCAATGATTATTCAATATCTCCTGATGGGCAGTTTATTCTCTTAGAATACAACTACGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197635_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0093016=DPPIV_N=PU(23.0=51.9)
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAATGCTGAATATGGAAACAGCT
R:
TCTAAGAGAATAAACTGCCCATCA
Band lengths:
116-220
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)