GgaEX6042583 @ galGal4
Exon Skipping
Gene
ENSGALG00000011110 | DPP4
Description
dipeptidyl peptidase 4 [Source:RefSeq peptide;Acc:NP_001026426]
Coordinates
chr7:20645277-20647757:+
Coord C1 exon
chr7:20645277-20645371
Coord A exon
chr7:20645494-20645568
Coord C2 exon
chr7:20647705-20647757
Length
75 bp
Sequences
Splice sites
3' ss Seq
ACTTTGTCTTTTATTGACAGAGT
3' ss Score
7.44
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
GAAATCAATATCTTCATGAAACATCTAATGGAAACATTCTACGTTTTGATGCTGAAACTGGAACATCCTCAGTAGTCTTGTTAAATACAACAATA
Seq A exon
AGTATACATGAGGCAACAACAGCTATATTGTCCCCTGACCAGAGGTTTGCTCTTCTGCAGTACAAGTATGAAAAG
Seq C2 exon
TTGTGGAGGCATTCCTACACAGCTTCATATCACATCTATGATTTCAATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011110-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0093016=DPPIV_N=PU(3.8=56.0)
C2:
PF0093016=DPPIV_N=FE(4.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAACATTCTACGTTTTGATGCTG
R:
AGATGTGATATGAAGCTGTGTAGGA
Band lengths:
104-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]