GgaEX6042583 @ galGal3
Exon Skipping
Gene
ENSGALG00000011110 | DPP4
Description
NA
Coordinates
chr7:22721071-22723557:+
Coord C1 exon
chr7:22721071-22721165
Coord A exon
chr7:22721288-22721362
Coord C2 exon
chr7:22723505-22723557
Length
75 bp
Sequences
Splice sites
3' ss Seq
ACTTTGTCTTTTATTGACAGAGT
3' ss Score
7.44
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
GAAATCAATATCTTCATGAAACATCTAATGGAAACATTCTACGTTTTGATGCTGAAACTGGAACATCCTCAGTAGTCTTGTTAAATACAACAATA
Seq A exon
AGTATACATGAGGCAACAACAGCTATATTGTCCCCTGACCAGAGGTTTGCTCTTCTGCAGTACAAGTATGAAAAG
Seq C2 exon
TTGTGGAGGCATTCCTACACAGCTTCATATCACATCTATGATTTCAATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011110-'2-4,'2-2,3-4=AN
Average complexity
A_S
Mappability confidence:
75%=100=60%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0093016=DPPIV_N=PU(3.8=56.0)
C2:
PF0093016=DPPIV_N=FE(4.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAACATTCTACGTTTTGATGCTG
R:
AGATGTGATATGAAGCTGTGTAGGA
Band lengths:
104-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]