BtaEX0011990 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015330 | DPP4
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MU57]
Coordinates
chr2:34509864-34518683:+
Coord C1 exon
chr2:34509864-34509955
Coord A exon
chr2:34511259-34511339
Coord C2 exon
chr2:34518631-34518683
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTACTTGATTGACAGGAT
3' ss Score
7.39
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
ATCATGAATATCTCTACAAACAAGAAAATAATATCTTGCTATTCAATGCTGAATATGGAAACAGCTCCATTTTCTTGGAGAACAGTACATTT
Seq A exon
GATGAATTTGGACATTCTATAAATGATTATTCAGTTTCACCAGATAGACAATATATTCTCTTCGAATACAACTATGTGAAG
Seq C2 exon
CAATGGAGGCATTCCTACACAGCTTCCTATGACATTTATGACTTAAATAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015330_MULTIEX1-5/5=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0093016=DPPIV_N=PU(8.5=51.9)
C2:
PF0093016=DPPIV_N=FE(10.4=100)
Main Skipping Isoform:
ENSBTAT00000056886fB2260
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAATGCTGAATATGGAAACAGCT
R:
AAGTCATAAATGTCATAGGAAGCTGT
Band lengths:
95-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development