RnoEX0029643 @ rn6
Exon Skipping
Gene
ENSRNOG00000030763 | Dpp4
Description
dipeptidylpeptidase 4 [Source:RGD Symbol;Acc:2515]
Coordinates
chr3:48340205-48346665:-
Coord C1 exon
chr3:48346574-48346665
Coord A exon
chr3:48345663-48345743
Coord C2 exon
chr3:48340205-48340257
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTCTTCCACAACAGGAG
3' ss Score
9.91
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ATTCTGAATACCTCTACAAGCAAGAAAACAATATCTTGCTATTCAATGCTGAACACGGGAACAGCTCCATTTTCTTGGAGAACAGTACCTTT
Seq A exon
GAGATCTTTGGAGATTCTATAAGTGATTATTCAGTGTCACCCGACAGACTGTTCGTTCTCTTAGAATACAATTATGTGAAG
Seq C2 exon
CAATGGAGACACTCCTACACGGCTTCATACAGTATTTATGACTTGAATAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030763-'6-6,'6-4,8-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0093016=DPPIV_N=PU(3.7=51.9)
C2:
PF0093016=DPPIV_N=FE(4.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGAATACCTCTACAAGCAAGA
R:
AAGTCATAAATACTGTATGAAGCCGT
Band lengths:
135-216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]