BtaEX0013532 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000048071 | EXOSC2
Description
Bos taurus exosome component 2 (EXOSC2), mRNA. [Source:RefSeq mRNA;Acc:NM_001046561]
Coordinates
chr11:100997647-100999494:+
Coord C1 exon
chr11:100997647-100997789
Coord A exon
chr11:100998780-100998836
Coord C2 exon
chr11:100999393-100999494
Length
57 bp
Sequences
Splice sites
3' ss Seq
CCGTTCTATCACCATCACAGGGG
3' ss Score
6.39
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
GCGCGAGTTATTGGCGCCAAGATGGCGTTGGAGATGAGGCTTCCCGTCGCTCGGAAGCCCCTTAGCGAGAGCCTGGGCCGCGAGAGTAAAAAGCACCTAGTGGTGCCAGGGGACACGATCACCACGGACACAGGCTTCATGCG
Seq A exon
GGGTCAGCACTGCTGATAAGCCAGCCTCCGCCCTCCCCCCATGTGCATATGAGAGAG
Seq C2 exon
GGGCCATGGAACCTATATGGGGGAAGAGAAGCTCATTGCATCTGTGGCTGGCTCCGTGGAGAGAGTAAACAAGTTGATCTGTGTAAAAGCTTTGAAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048071_MULTIEX1-1/8=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.549 A=0.800 C2=0.029
Domain overlap (PFAM):
C1:
PF143821=ECR1_N=PU(38.5=36.6)
A:
PF143821=ECR1_N=PD(11.1=33.3)
C2:
PF143821=ECR1_N=PD(59.0=65.7)
Main Inclusion Isoform:
ENSBTAT00000063775fB2580
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCGAGAGTAAAAAGCACCT
R:
TTACTCTCTCCACGGAGCCAG
Band lengths:
134-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development