BtaEX0013533 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000048071 | EXOSC2
Description
Bos taurus exosome component 2 (EXOSC2), mRNA. [Source:RefSeq mRNA;Acc:NM_001046561]
Coordinates
chr11:100997647-101003738:+
Coord C1 exon
chr11:100997647-100997789
Coord A exon
chr11:100999393-100999494
Coord C2 exon
chr11:101003670-101003738
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTATCTTCCTGTTGCAACAGGGG
3' ss Score
7.19
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCGCGAGTTATTGGCGCCAAGATGGCGTTGGAGATGAGGCTTCCCGTCGCTCGGAAGCCCCTTAGCGAGAGCCTGGGCCGCGAGAGTAAAAAGCACCTAGTGGTGCCAGGGGACACGATCACCACGGACACAGGCTTCATGCG
Seq A exon
GGGCCATGGAACCTATATGGGGGAAGAGAAGCTCATTGCATCTGTGGCTGGCTCCGTGGAGAGAGTAAACAAGTTGATCTGTGTAAAAGCTTTGAAAACCAG
Seq C2 exon
GCTGAGGTCCAGGCAGTGTTCTCTGATGGAGCCGTCTCTCTGCACACGAGGAGTCTCAAATACGGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048071_MULTIEX1-2/8=C1-6
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.549 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
PF143821=ECR1_N=PU(38.5=36.6)
A:
PF143821=ECR1_N=PD(59.0=65.7)
C2:
NO
Main Skipping Isoform:
ENSBTAT00000063775fB2580
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGTTATTGGCGCCAAGAT
R:
TTTTCCGTATTTGAGACTCCTCGT
Band lengths:
210-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development