GgaEX1023402 @ galGal4
Exon Skipping
Gene
ENSGALG00000003887 | EXOSC2
Description
exosome component 2 [Source:RefSeq peptide;Acc:NP_001012816]
Coordinates
chr17:5964138-5964613:+
Coord C1 exon
chr17:5964138-5964295
Coord A exon
chr17:5964369-5964470
Coord C2 exon
chr17:5964568-5964613
Length
102 bp
Sequences
Splice sites
3' ss Seq
TACGTCCGTTCTGTCTGCAGGGG
3' ss Score
11.25
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGGGGCGCCGGCGCCGCTCCGCCCGCACCCAAGATGGCGGCGGTGGCCATGAGGCTGCCGGTGATCCGCAAAGCGGTGGGGCCGAGCGGGCCGCGGGGCGGCGAGAAGCACCTGGTGGTGCCCGGAGACACCATCACTACGGACACGGGATACATGAG
Seq A exon
GGGCCACGGCACGTACGTGGACGAGGAGAAGCTCGTCGCCTCGGTCGCCGGTGCTGTGGAGAGGGTGAACAAGCTGGTGTGCGTCACGCCGCTGAAGACCAG
Seq C2 exon
ATACAACGGCGAGGTCGGAGACATCGTGGTCGGGCGGATCACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003887-'1-1,'1-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
PF143821=ECR1_N=PU(38.5=35.7)
A:
PF143821=ECR1_N=PD(59.0=65.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGAGGCTGCCGGTGATC
R:
CTCCGTGATCCGCCCGAC
Band lengths:
157-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]