HsaEX6063531 @ hg19
Exon Skipping
Gene
ENSG00000130713 | EXOSC2
Description
exosome component 2 [Source:HGNC Symbol;Acc:17097]
Coordinates
chr9:133569108-133573014:+
Coord C1 exon
chr9:133569108-133569300
Coord A exon
chr9:133570879-133570980
Coord C2 exon
chr9:133572969-133573014
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTATCTTCGCCTTGCATCAGGGG
3' ss Score
5.36
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GGCCTGGAGTTGTGGAGTCGGATATCGCAGCTCCCGACTGAGCTGCGCCTGCGCAACTCATTGGCGCCAAGATGGCGATGGAGATGAGGCTTCCAGTGGCTCGCAAGCCTCTTAGCGAGAGACTGGGCCGCGACACTAAGAAACATCTAGTGGTGCCGGGGGATACAATCACTACGGACACAGGATTCATGCG
Seq A exon
GGGCCATGGAACGTATATGGGAGAAGAGAAGCTCATTGCATCTGTTGCTGGCTCTGTGGAGAGAGTAAACAAGTTGATCTGTGTGAAAGCTTTGAAAACCAG
Seq C2 exon
ATACATTGGTGAAGTAGGAGACATCGTAGTGGGACGAATCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130713-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.275 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
PF143821=ECR1_N=PU(38.5=36.6)
A:
PF143821=ECR1_N=PD(59.0=65.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGAGTTGTGGAGTCGGAT
R:
TCTGTGATTCGTCCCACTACG
Band lengths:
236-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)