DreEX0031161 @ danRer10
Exon Skipping
Gene
ENSDARG00000028688 | exosc2
Description
exosome component 2 [Source:ZFIN;Acc:ZDB-GENE-050417-27]
Coordinates
chr5:71352825-71355809:+
Coord C1 exon
chr5:71352825-71353018
Coord A exon
chr5:71355418-71355519
Coord C2 exon
chr5:71355764-71355809
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGACTTCACCTCGTCCTCAGGGG
3' ss Score
8.72
5' ss Seq
CAGGTGCAC
5' ss Score
4.29
Exon sequences
Seq C1 exon
CGGGCTTTTATTATGAAGTGGAGCCGTGCTCGCCGCCATATTGCCCGGCTATAGTGTTGTTGAAGCATGGCGGTGGAGATGCGGCTTCCAGCGGTTCACAAACACGTTTCCCTGAAAACAGGACAGAGTTCCCGCGAAGACAAACACCTGGTTGTGCCTGGAGATGTGATCACCTCCGACACGGGCTTCATGAG
Seq A exon
GGGTCACGGCACCTACATGGATGAAGACAGACTCACCGCTTCAGTGGCAGGACAGGTGGAGCGAGTCAACAAACTCATCTGTGTGAAACCGCTGAAGACCAG
Seq C2 exon
GTATAACGGAGAGGTGGGTGATGTGGTTGTGGGCAGAATCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028688-'0-3,'0-0,1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.302 A=0.086 C2=0.000
Domain overlap (PFAM):
C1:
PF143821=ECR1_N=PU(38.5=34.9)
A:
PF143821=ECR1_N=PD(59.0=65.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTTTATTATGAAGTGGAGCCG
R:
GTGATTCTGCCCACAACCACA
Band lengths:
234-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]