MmuEX0017622 @ mm10
Exon Skipping
Gene
ENSMUSG00000039356 | Exosc2
Description
exosome component 2 [Source:MGI Symbol;Acc:MGI:2385133]
Coordinates
chr2:31670715-31674560:+
Coord C1 exon
chr2:31670715-31670861
Coord A exon
chr2:31672472-31672573
Coord C2 exon
chr2:31674515-31674560
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTGGCCTTGTCCTTGCGCAGGGG
3' ss Score
7.56
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCCTGCGCAAGTCATTGGCGCCAAGATGGCGTTGGAGATGAGGCTCCCTAAAGCTCGCAAACCTCTCAGTGAGAGCTTGGGCCGCGACTCTAAGAAACACTTGGTGGTGCCGGGGGACACGATCACCACGGACACAGGCTTCATGCG
Seq A exon
GGGCCATGGGACATACATGGGGGAAGAGAAGCTCATTGCGTCTGTGGCCGGCTCTGTGGAGAGAGTGAACAAACTGATCTGTGTCAAAGCCTTGAAAACCAG
Seq C2 exon
ATACAATGGAGAGGTCGGAGACATTGTAGTGGGGAGAATCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039356_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
PF143821=ECR1_N=PU(38.5=36.6)
A:
PF143821=ECR1_N=PD(59.0=65.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTCATTGGCGCCAAGATG
R:
CTCTGTGATTCTCCCCACTACA
Band lengths:
186-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types