RnoEX0033603 @ rn6
Exon Skipping
Gene
ENSRNOG00000009245 | Exosc2
Description
exosome component 2 [Source:RGD Symbol;Acc:1306573]
Coordinates
chr3:10158481-10161989:-
Coord C1 exon
chr3:10161856-10161989
Coord A exon
chr3:10160521-10160622
Coord C2 exon
chr3:10158481-10158526
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTGGTCTTGTCCTTGCACAGGGG
3' ss Score
7.83
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ATTGGCGCCAAGATGGCGTTGGAGATGAGGCTCCCTAGGGCTCGCAAACCTCTCAGTGAGAGCTTGGGCCGCGATTCTAAAAAACATTTGGTAGTGCCAGGGGACACGATCACCACGGATACAGGCTTCATGCG
Seq A exon
GGGCCATGGAACATACATGGGGGAGGAAAAGCTCATTGCGTCAGTGGCCGGCTCTGTGGAGAGAGTGAACAAGCTGATCTGTGTCAAAGCCTTGAAAACCAG
Seq C2 exon
ATACAATGGAGAAGTCGGAGACATTGTGGTGGGGAGGATTACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009245-'1-3,'1-1,4-3
Average complexity
S
Mappability confidence:
89%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.415 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
PF143821=ECR1_N=PU(38.5=36.6)
A:
PF143821=ECR1_N=PD(59.0=65.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGATGGCGTTGGAGATGA
R:
TCAGTAATCCTCCCCACCACA
Band lengths:
172-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]