BtaEX0013534 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000048071 | EXOSC2
Description
Bos taurus exosome component 2 (EXOSC2), mRNA. [Source:RefSeq mRNA;Acc:NM_001046561]
Coordinates
chr11:100999393-101005065:+
Coord C1 exon
chr11:100999393-100999494
Coord A exon
chr11:101001153-101001198
Coord C2 exon
chr11:101004889-101005065
Length
46 bp
Sequences
Splice sites
3' ss Seq
CCTTCTGCTTTTTCTTTCAGATA
3' ss Score
12.86
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
GGGCCATGGAACCTATATGGGGGAAGAGAAGCTCATTGCATCTGTGGCTGGCTCCGTGGAGAGAGTAAACAAGTTGATCTGTGTAAAAGCTTTGAAAACCAG
Seq A exon
ATATAATGGTGAAGTGGGAGACATTGTAGTGGGGAGAATCACAGAG
Seq C2 exon
CTAGGTCAGGGCGTTTTGGTTCAGGTCTCCCCCTCCCTGGTGAAACGGCAGAAGACCCACTTCCATGACCTGCCGTGCGGCGCCTCAGTGATCCTGGGCAACAACGGCTTCATCTGGGTCTACCCAACCCCCGAGCACAAAGAAGACGATGCAGGGGGCTTCATCGCAAACCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048071_MULTIEX1-3/8=2-7
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF143821=ECR1_N=PD(59.0=65.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGAAGAGAAGCTCATTGC
R:
AAGTGGGTCTTCTGCCGTTTC
Band lengths:
146-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development