HsaEX0023529 @ hg19
Exon Skipping
Gene
ENSG00000130713 | EXOSC2
Description
exosome component 2 [Source:HGNC Symbol;Acc:17097]
Coordinates
chr9:133570879-133577697:+
Coord C1 exon
chr9:133570879-133570993
Coord A exon
chr9:133572969-133573014
Coord C2 exon
chr9:133577521-133577697
Length
46 bp
Sequences
Splice sites
3' ss Seq
CCTTGTGTTTTGTCTTTCAGATA
3' ss Score
12.95
5' ss Seq
GAGGTAACG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GGGCCATGGAACGTATATGGGAGAAGAGAAGCTCATTGCATCTGTTGCTGGCTCTGTGGAGAGAGTAAACAAGTTGATCTGTGTGAAAGCTTTGAAAACCAGGTGAGAACAAAAG
Seq A exon
ATACATTGGTGAAGTAGGAGACATCGTAGTGGGACGAATCACAGAG
Seq C2 exon
CTAGGTCAGGGGGTTTTGGTCCAGGTTTCCCCCTCCCTGGTGAAACGGCAGAAGACCCACTTTCATGATTTGCCATGTGGTGCCTCAGTGATTCTCGGTAACAACGGCTTCATCTGGATTTACCCAACACCTGAGCACAAAGAAGAGGAAGCAGGGGGCTTCATTGCAAACCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130713_MULTIEX1-1/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF143821=ECR1_N=PD(59.0=65.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTGTTGCTGGCTCTGTGG
R:
AAGTGGGTCTTCTGCCGTTTC
Band lengths:
139-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)