GgaEX1023404 @ galGal4
Exon Skipping
Gene
ENSGALG00000003887 | EXOSC2
Description
exosome component 2 [Source:RefSeq peptide;Acc:NP_001012816]
Coordinates
chr17:5964369-5965414:+
Coord C1 exon
chr17:5964369-5964470
Coord A exon
chr17:5964568-5964613
Coord C2 exon
chr17:5965388-5965414
Length
46 bp
Sequences
Splice sites
3' ss Seq
GTGCTCTGTCCCACCGCCAGATA
3' ss Score
8.41
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GGGCCACGGCACGTACGTGGACGAGGAGAAGCTCGTCGCCTCGGTCGCCGGTGCTGTGGAGAGGGTGAACAAGCTGGTGTGCGTCACGCCGCTGAAGACCAG
Seq A exon
ATACAACGGCGAGGTCGGAGACATCGTGGTCGGGCGGATCACGGAG
Seq C2 exon
GTTCAGCAGAAACGATGGAAAGTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003887_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF143821=ECR1_N=PD(59.0=65.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTACGTGGACGAGGAGAAG
R:
TCCACTTTCCATCGTTTCTGCT
Band lengths:
118-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]