DreEX0031162 @ danRer10
Exon Skipping
Gene
ENSDARG00000028688 | exosc2
Description
exosome component 2 [Source:ZFIN;Acc:ZDB-GENE-050417-27]
Coordinates
chr5:71355418-71356007:+
Coord C1 exon
chr5:71355418-71355519
Coord A exon
chr5:71355764-71355809
Coord C2 exon
chr5:71355918-71356007
Length
46 bp
Sequences
Splice sites
3' ss Seq
GTGATGTTCTCCTCCTGCAGGTA
3' ss Score
11.74
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GGGTCACGGCACCTACATGGATGAAGACAGACTCACCGCTTCAGTGGCAGGACAGGTGGAGCGAGTCAACAAACTCATCTGTGTGAAACCGCTGAAGACCAG
Seq A exon
GTATAACGGAGAGGTGGGTGATGTGGTTGTGGGCAGAATCACTGAG
Seq C2 exon
GTGCAGCAGAAGCGATGGAAAGTGGAGACTAACTCGCGTCTGGATTCAGTGCTGCTGCTGTCGGCGGTCAATCTGCCTGGAGGAGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028688-'1-4,'1-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF143821=ECR1_N=PD(59.0=65.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGAGCGAGTCAACAAACT
R:
TCTCCTCCAGGCAGATTGACC
Band lengths:
134-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]