MmuEX6100422 @ mm10
Exon Skipping
Gene
ENSMUSG00000039356 | Exosc2
Description
exosome component 2 [Source:MGI Symbol;Acc:MGI:2385133]
Coordinates
chr2:31672472-31674784:+
Coord C1 exon
chr2:31672472-31672573
Coord A exon
chr2:31674515-31674560
Coord C2 exon
chr2:31674695-31674784
Length
46 bp
Sequences
Splice sites
3' ss Seq
GCTTCTGTTTTCTCTTGCAGATA
3' ss Score
13.45
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
GGGCCATGGGACATACATGGGGGAAGAGAAGCTCATTGCGTCTGTGGCCGGCTCTGTGGAGAGAGTGAACAAACTGATCTGTGTCAAAGCCTTGAAAACCAG
Seq A exon
ATACAATGGAGAGGTCGGAGACATTGTAGTGGGGAGAATCACAGAG
Seq C2 exon
GTTCAACAGAAGAGGTGGAAGGTAGAGACCAATTCCAGGCTGGACTCCGTCTTGCTCCTCTCATCCATGAACCTACCTGGGGGAGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039356-'5-4,'5-3,8-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF143821=ECR1_N=PD(59.0=65.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGGGGGAAGAGAAGCTCA
R:
TCCAGCCTGGAATTGGTCTCT
Band lengths:
132-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types