HsaEX0023529 @ hg38
Exon Skipping
Gene
ENSG00000130713 | EXOSC2
Description
exosome component 2 [Source:HGNC Symbol;Acc:HGNC:17097]
Coordinates
chr9:130695492-130699394:+
Coord C1 exon
chr9:130695492-130695606
Coord A exon
chr9:130697582-130697627
Coord C2 exon
chr9:130699329-130699394
Length
46 bp
Sequences
Splice sites
3' ss Seq
CCTTGTGTTTTGTCTTTCAGATA
3' ss Score
12.95
5' ss Seq
GAGGTAACG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GGGCCATGGAACGTATATGGGAGAAGAGAAGCTCATTGCATCTGTTGCTGGCTCTGTGGAGAGAGTAAACAAGTTGATCTGTGTGAAAGCTTTGAAAACCAGGTGAGAACAAAAG
Seq A exon
ATACATTGGTGAAGTAGGAGACATCGTAGTGGGACGAATCACAGAG
Seq C2 exon
AGGAGAAGATCTGCAGAAGATGAGCTTGCAATGAGAGGTTTCTTACAGGAAGGGGACCTTATCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130713_MULTIEX1-1/5=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
PF143821=ECR1_N=PD(59.0=65.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCATGGAACGTATATGGG
R:
TGCAAGCTCATCTTCTGCAGA
Band lengths:
145-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development