GgaEX1023404 @ galGal3
Exon Skipping
Gene
ENSGALG00000003887 | Q5ZHN8_CHICK
Description
NA
Coordinates
chr17:6556968-6558076:+
Coord C1 exon
chr17:6556968-6557069
Coord A exon
chr17:6557167-6557212
Coord C2 exon
chr17:6557987-6558076
Length
46 bp
Sequences
Splice sites
3' ss Seq
GTGCTCTGTCCCACCGCCAGATA
3' ss Score
8.41
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GGGCCACGGCACGTACGTGGACGAGGAGAAGCTCGTCGCCTCGGTCGCCGGTGCTGTGGAGAGGGTGAACAAGCTGGTGTGCGTCACGCCGCTGAAGACCAG
Seq A exon
ATACAACGGCGAGGTCGGAGACATCGTGGTCGGGCGGATCACGGAG
Seq C2 exon
GTTCAGCAGAAACGATGGAAAGTGGAAACCAATTCCAGGCTGGATTCAGTCCTGTTGTTGTCGTCTATGAATTTACCTGGTGGGGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003887-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF143821=ECR1_N=PD(92.0=65.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGGGTGAACAAGCTGGTG
R:
CAGTTCCCCACCAGGTAAATTCA
Band lengths:
134-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]