HsaINT0058832 @ hg19
Intron Retention
Gene
ENSG00000130713 | EXOSC2
Description
exosome component 2 [Source:HGNC Symbol;Acc:17097]
Coordinates
chr9:133574716-133576322:+
Coord C1 exon
chr9:133574716-133574781
Coord A exon
chr9:133574782-133576253
Coord C2 exon
chr9:133576254-133576322
Length
1472 bp
Sequences
Splice sites
5' ss Seq
AGTGTATCC
5' ss Score
-2.39
3' ss Seq
TCCTTCATCACCCTGGCCAGGCT
3' ss Score
3.75
Exon sequences
Seq C1 exon
AGGAGAAGATCTGCAGAAGATGAGCTTGCAATGAGAGGTTTCTTACAGGAAGGGGACCTTATCAGT
Seq A exon
GTATCCTGCGCTTTGCACTCCAGCCTCTTGATGCTTTTCTGTGGGACTGGGAAATGGGCCTTCCATTGTATGTCTCTGACGGAAGAACCATGTCATCCTTGCAGGGATCCGAGTCTTAGACCAAGTGTCGGGCTCTGCTGCATCCTTTCTCAGTCTCCTTAATTCAGGCTGACTCCCCAGCTCTTGTTGGGACCTGCTGCTAAGTCATTTCTTTGGGTCTTGTAACTTACGGTGGCCTGTGCTTTAGACTAGGCTTTTGTTAATGGTGTTAACTTTTAGCGCAGGGAGTGGAGAAGGTGTTGTTCACGTCAAGATATTAATGACAGGCCGAGTGTGGTGACTCATGCCTGTAATCCCAGCGCTTTGGAAGGCCAAGGAGGGAGGACTGCTTGAGCCTAAGAGTTCAAGACCAGCCTGGGCAACATAGCAAGACCCCCCTCTCTACAAAAAAATTAAAAAAGAATTAGCCGGGCGTGGTGGCACATGCCTGTAGTCCTAGCTACTCAGGAGGCTGGGGCCAGAGGGTTGCTTGAGCCCAGGAGCTCAAGGCTACAGTAAGCTATGATCACACCACTGCATTCCAGCTTGGGTGACAGAACAAGACTCTGTCTCTATTTTATGTTATTTTTTAAATTTTTCTTTTTTTTTAATGACGGAGTCTTGCTCTGTTGCCCAGACTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACGTCCGCCTCTTGGATTCAAGCAATTCTGCCTTAGCCTCCCAAATAGCTAGGATTACCGGCGTGCGTCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGTTTCACCATATTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCTGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACGGGCATGAGCCACCATGCCTGGCCTCTGTCTTTATTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTTTTGAGACGGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAATGGTGGGATCTCGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGCGCCACTATGCCCGACTAATTTTGTACTTTTAGTAGAGACGGGGTTTCTCCATGTTGGTCAGGCTGGTCTAGAACTCCTGACCTCAGGTGATCGACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGCACCTGGCCTTCTGTCTGTATTTTTAAAAAAAAGATATTCATGACAACCAAGGGGAGAGGTAAGGTCACAGTGATGTGCTCTGGGTCAAAGATTGTTGAGCCTGGACCATTGGAGAGGGGAGGAAAAGATGGAGGTGTGGGGTCAAGGGGAGAGGCTGCAGAGGACAGGACAGTGTGTGGCCAAGGCTGCTGTTTGTTCCTTCATCACCCTGGCCAG
Seq C2 exon
GCTGAGGTCCAGGCAGTGTTCTCTGACGGAGCTGTCTCTTTGCACACGAGGAGCCTGAAATATGGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130713-EXOSC2:NM_014285:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)