GgaINT0124647 @ galGal4
Intron Retention
Gene
ENSGALG00000003887 | EXOSC2
Description
exosome component 2 [Source:RefSeq peptide;Acc:NP_001012816]
Coordinates
chr17:5965705-5966001:+
Coord C1 exon
chr17:5965705-5965770
Coord A exon
chr17:5965771-5965932
Coord C2 exon
chr17:5965933-5966001
Length
162 bp
Sequences
Splice sites
5' ss Seq
AGTGTATCC
5' ss Score
-2.39
3' ss Seq
TCCTTAAGAGGCACTGACAGGCA
3' ss Score
-5.75
Exon sequences
Seq C1 exon
AGAAGGAGATCAGCAGAAGACGAGCTTGCGATGAGGGACTATCTGCAGGAAGGGGACCTCATCAGT
Seq A exon
GTATCCTTCCACTGCTTGTACTCAGACAGAAGAGTCGAGGGGCATGGGGGGAGCAGCCAGACCCTGCCTTTCCCAGGCAGGGAGAGCTCTGTGCTGGGGCAGTTGGTGGCTGTTGGCACAGGGCAGCAGGAGGAAGTCTGTTTCCTTAAGAGGCACTGACAG
Seq C2 exon
GCAGAGGTCCAGTCTGTATTTTCTGATGGGGCTGTATCGCTGCACACCAGGAGTCTGAAATACGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003887:ENSGALT00000039547:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATCAGCAGAAGACGAGC
R:
TTCCCGTATTTCAGACTCCTGGT
Band lengths:
130-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]