RnoINT0057246 @ rn6
Intron Retention
Gene
ENSRNOG00000009245 | Exosc2
Description
exosome component 2 [Source:RGD Symbol;Acc:1306573]
Coordinates
chr3:10156413-10157283:-
Coord C1 exon
chr3:10157218-10157283
Coord A exon
chr3:10156482-10157217
Coord C2 exon
chr3:10156413-10156481
Length
736 bp
Sequences
Splice sites
5' ss Seq
AGTGTATCC
5' ss Score
-2.39
3' ss Seq
TTCCTTCATCACATGAGTAGGCG
3' ss Score
2.01
Exon sequences
Seq C1 exon
AGGAGAAGGTCGGCGGAGGATGAGCTGGCCATGAGAGGCTTCTTACAAGAAGGCGACCTCATCAGT
Seq A exon
GTATCCTGCACCTTCCTTCTGTCCTACAGGGCTAGGAGTGTGCTTGCACTCTTGTCTGACTGGGGAACAGCCTTGCAGGGACTGAGTCGGGGGTAACATGCTCGGGGCTCTGCTGCCGCTGTGTTCGTTCTCCTTCGCTCAGAACGATGCCTTGGGTTTTGTAACTTGTGATTCATGGTGAAGACCCAGTGATCGTTCCTTTCTTTTTAAAAAGGGTAGCCCAGGCTGGCTTAGAACTCACTGTGTACCCCAGGCTAGCCTCAAATTTCCTGAGTTCTGAGATCCAAGTATAGACTATCATTCCTGCCTGTGTCCAAATTGAGGGAATTTGGATGCAATTAAGAAAATTTAGACCCACATTTTCTTTCTTTATTTAAAAAAATATTTGATCATATTTGTGTGTGATCACTGTGTGGAGGTCAGAGGACAACGTATAGGGACTGGTTCTCTTCTCTTACCGTGTGATCTGAGGGACAGAACTCACCTAGTCAGGCTTGATGACAGCTATCTACTCAGCCACCTCACCACATCTAAATGATGTGAACATACAGCGATGCAAAGATTGTTTGTATCAAGATACTCTTGCCAACCAGGGGGAAGCTGAGGTCATAGTGTTGTCCTTTATAGAGGCCCATAAAAGATGGCCAGAGTGACCTGCTGGTGGGGGGGGGGCTGCAGGCAGGTGGCACAGGTGTGGGTTTCCAAGGCTACCGTTGTTCCTTCATCACATGAGTAG
Seq C2 exon
GCGGAAGTCCAGGCTGTGTTCTCCGATGGAGCTGTTTCTCTGCACACGAGGAGCCTGAAGTACGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009245:ENSRNOT00000012312:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]