BtaINT0058642 @ bosTau6
Intron Retention
Gene
ENSBTAG00000048071 | EXOSC2
Description
Bos taurus exosome component 2 (EXOSC2), mRNA. [Source:RefSeq mRNA;Acc:NM_001046561]
Coordinates
chr11:101001153-101001574:+
Coord C1 exon
chr11:101001153-101001198
Coord A exon
chr11:101001199-101001484
Coord C2 exon
chr11:101001485-101001574
Length
286 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
GGGGTTCCTTTGTTTTGTAGGTT
3' ss Score
8.97
Exon sequences
Seq C1 exon
ATATAATGGTGAAGTGGGAGACATTGTAGTGGGGAGAATCACAGAG
Seq A exon
GTAAAGTCTTAGCAGATTGGTTTTCACAAAGTAAAAGTGAGCTGGTGATCTAATGAATGAGATAGTCATCCTATTACACGCAATTACACGAAAGAAGGATTCACTGTGTTTGGCTCTTACGTGACCTTTGATGAAAACAGTTTGTTTGTAAACAGTTTGATGTAAATGGTTTGTTTGTAAACAGTTGGATGTAAGTGGTTTGTCCCATCGGGGGTTATTGTTCATTTACAGTGTGAGCTCTGGCCTTGGAGTATGTGTCCAGGTGTGGGGTTCCTTTGTTTTGTAG
Seq C2 exon
GTTCAACAGAAGAGGTGGAAGGTGGAGACCAACTCCAGGCTGGATTCAGTCTTGCTTCTCTCATCCATGAACCTTCCCGGAGGAGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048071:ENSBTAT00000063775:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGTGAAGTGGGAGACATTGT
R:
CAGCTCTCCTCCGGGAAGG
Band lengths:
132-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development