GgaINT0124645 @ galGal4
Intron Retention
Gene
ENSGALG00000003887 | EXOSC2
Description
exosome component 2 [Source:RefSeq peptide;Acc:NP_001012816]
Coordinates
chr17:5964568-5965414:+
Coord C1 exon
chr17:5964568-5964613
Coord A exon
chr17:5964614-5965387
Coord C2 exon
chr17:5965388-5965414
Length
774 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
ACGTCATTTTTCTTCTCCAGGTT
3' ss Score
11.29
Exon sequences
Seq C1 exon
ATACAACGGCGAGGTCGGAGACATCGTGGTCGGGCGGATCACGGAG
Seq A exon
GTGAGGAGCCGGGCGGGCCCAGGAGAACAAAGCCAAGAGCGAGGTCTTACAGCTCAGAGAGCAAACCGTGCCATGGCCTGCATCCGGAGCAGTGCGACCAGCGGGGCGGGGAGGTGGTCCAGACCTCACACTGCGTCCTGATGGGGCGTCCTCAGTGCCGGGGGGACACGGGTCTGTTGGAGCACGTCCAGAGGGGGGCCACAAAAATGATCCAAGGGATGGAACAGCTCTCTGTGAGGATGGGCTGAGAGCTGGGGCTGTGTGGGGAGAAGAGACGGGTCTGGGGAGAGCTGAGAGCGGCCTGTCAGTATCTAAAGGGGCTGTAAGAAAGAAGGGACAGACTTTTTACTACGGTCTGTTGTGGTAGGACAAGGGGAAACGGGTTCAGTCTAAACAGGGGAGATTTGCATTCAGTATAAGGAAGATGTCTTTTACAATAAGGGCACTGAGGCACTGGCACAAGGTACCCAGGGCGGTGGTGGATGCCCCATCCCTGCAGACACCGGGGGTCAGAGCTGGACGGGGCTCTGTGCACCTGAGAGACCTGCAGATGTCCCTGTTCACTGCAGGGAGTTGTGCCAGGTGGCTTTTAAGGGTCCCTTCCAACTGAAACGACTCTATGGTTCTCTGACAGCCCCTGCTGCACTGGCCGGTCATTGCTTGTGGCTGTTGCGGCGCTTTGCTGTGAAGTCAGTCAGCTGCATGACTTCCCACTCTGCTGAAGAGATTGTGTTCATTTTCTGAGTTTACATTAACGTCATTTTTCTTCTCCAG
Seq C2 exon
GTTCAGCAGAAACGATGGAAAGTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003887:ENSGALT00000039547:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]