MmuINT0059849 @ mm9
Intron Retention
Gene
ENSMUSG00000039356 | Exosc2
Description
exosome component 2 [Source:MGI Symbol;Acc:MGI:2385133]
Coordinates
chr2:31530035-31530304:+
Coord C1 exon
chr2:31530035-31530080
Coord A exon
chr2:31530081-31530214
Coord C2 exon
chr2:31530215-31530304
Length
134 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
CACATTTATTTCTCTCACAGGTT
3' ss Score
9.95
Exon sequences
Seq C1 exon
ATACAATGGAGAGGTCGGAGACATTGTAGTGGGGAGAATCACAGAG
Seq A exon
GTAAAGTCAGTGTTCATAAAGAGAAGGAGGCTGGCGGCTCAGGGATTGGGGCCTTCATCTGTGAAAGTATGAAGAAGGGGCCCTTTGTTTCTGGGGTGGTGTGAAATGCTATCCCACATTTATTTCTCTCACAG
Seq C2 exon
GTTCAACAGAAGAGGTGGAAGGTAGAGACCAATTCCAGGCTGGACTCCGTCTTGCTCCTCTCATCCATGAACCTACCTGGGGGAGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039356-Exosc2:NM_144886:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACAATGGAGAGGTCGGAGA
R:
TCTCCCCCAGGTAGGTTCATG
Band lengths:
132-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: