DreINT0065403 @ danRer10
Intron Retention
Gene
ENSDARG00000028688 | exosc2
Description
exosome component 2 [Source:ZFIN;Acc:ZDB-GENE-050417-27]
Coordinates
chr5:71355764-71356007:+
Coord C1 exon
chr5:71355764-71355809
Coord A exon
chr5:71355810-71355917
Coord C2 exon
chr5:71355918-71356007
Length
108 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
GTGCATCTCTAAATGTTAAGGTG
3' ss Score
4.3
Exon sequences
Seq C1 exon
GTATAACGGAGAGGTGGGTGATGTGGTTGTGGGCAGAATCACTGAG
Seq A exon
GTCAGTGGTGTTCAGTAGTTTATGTATAAAATCTCTCGTTGTTGTTGTTGATGATGATGATGATGATGATGATGATGATGATGATGATGTGCATCTCTAAATGTTAAG
Seq C2 exon
GTGCAGCAGAAGCGATGGAAAGTGGAGACTAACTCGCGTCTGGATTCAGTGCTGCTGCTGTCGGCGGTCAATCTGCCTGGAGGAGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028688:ENSDART00000149195:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACGGAGAGGTGGGTGATGT
R:
GCTCTCCTCCAGGCAGATTGA
Band lengths:
131-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]