RnoINT0057244 @ rn6
Intron Retention
Gene
ENSRNOG00000009245 | Exosc2
Description
exosome component 2 [Source:RGD Symbol;Acc:1306573]
Coordinates
chr3:10158266-10158526:-
Coord C1 exon
chr3:10158481-10158526
Coord A exon
chr3:10158356-10158480
Coord C2 exon
chr3:10158266-10158355
Length
125 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
TATGTTTATTTCCCTCCCAGGTC
3' ss Score
10.38
Exon sequences
Seq C1 exon
ATACAATGGAGAAGTCGGAGACATTGTGGTGGGGAGGATTACTGAG
Seq A exon
GTAAAGTCAACGTTCCCAAAGTGAAGGAGACTCAGGGAGGAGCCTTCATTCTGTGAAAGTGTGAAGAAGGGACCCTTTGTTTCTGGGGTGACTGAGATGCTACCCTATGTTTATTTCCCTCCCAG
Seq C2 exon
GTCCAACAGAAGAGGTGGAAGGTGGAGACCAACTCCAGGCTGGACTCCGTCCTGCTCCTCTCATCCATGAACCTACCTGGGGGAGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009245:ENSRNOT00000012312:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGAGACATTGTGGTGGGG
R:
CAGCTCTCCCCCAGGTAGG
Band lengths:
122-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]