BtaEX0014185 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010743 | FASTKD1
Description
Bos taurus FAST kinase domains 1 (FASTKD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102031]
Coordinates
chr2:26756877-26762222:+
Coord C1 exon
chr2:26756877-26757008
Coord A exon
chr2:26758460-26758518
Coord C2 exon
chr2:26761736-26762222
Length
59 bp
Sequences
Splice sites
3' ss Seq
ACAATACTATTGGCCTACAGGTA
3' ss Score
7.36
5' ss Seq
CCGGTAACG
5' ss Score
7.34
Exon sequences
Seq C1 exon
GATTACTTCAATTCTGCATAAACATTTGGATAACTATAAACCAGTAGAGTTGTTGAGAATAACTCAAGCGTTGATTTTTCTACATTTTCAAAGTAAAGAGCTTTTTGTGAAACTCAGAGAATTACTGCTTAG
Seq A exon
GTATGCTAACAGAAAAGTAAGACAGGAGTGGGAGCATCACAGGAGATTTCACTTTACCG
Seq C2 exon
TTATTTGAAAGTCAGTGTCATACCTAGTGAGATTTCCATCCTGGTCTATGCTCTTTCGATGCTTCCTTCTGCTCACCTGGACGAAGTGAGGATGTCTCAGATTGAAGCAGTTTTGCCACAGTGTGACCTATATGACCTGAATATTTTTGCAACATCTGTTTTAAGATGTATTCAGTATGATCACGTGTATCTGAATAATATTCCTGCGAAACAGTTGAAAGTACTTCAAAAATTAGATCACTATGGTCATCAGAGACTACAAGAATGTAAAAGTTTGAATCTGTTATGGGAAGAAGTTAAATCTTTAAAAGGAGACTGGTTTGCTGATTCACTTCTTGAAGAAACAGTTGTTACCTTACAGCGTCTGATGGATGAAATGAATTACATCAATGTTGCAGGGATTGCATCTTTCATTTCTAGAACCAACTACCTCAGTACTTCACTACTTGATAAGATAGCCTCAGTGGTCCTTCAACAGATTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010743_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000055855fB2705
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGCTTTTTGTGAAACTCAGAGA
R:
ACATCCTCACTTCGTCCAGGT
Band lengths:
132-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development