BtaEX0014186 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010743 | FASTKD1
Description
Bos taurus FAST kinase domains 1 (FASTKD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102031]
Coordinates
chr2:26756877-26762222:+
Coord C1 exon
chr2:26756877-26757008
Coord A exon
chr2:26759533-26759657
Coord C2 exon
chr2:26761736-26762222
Length
125 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTTTTTCTTTAACAGTTT
3' ss Score
11.19
5' ss Seq
AATGTGAGC
5' ss Score
5.2
Exon sequences
Seq C1 exon
GATTACTTCAATTCTGCATAAACATTTGGATAACTATAAACCAGTAGAGTTGTTGAGAATAACTCAAGCGTTGATTTTTCTACATTTTCAAAGTAAAGAGCTTTTTGTGAAACTCAGAGAATTACTGCTTAG
Seq A exon
TTTCCCAACTAGGGATTGCACCCGGGCTACAGCAGTGAAACCCGGAATCCTAATCACTAATCCACCAGGGAACTCTAAATAGTTTTCTAAAGTGACTGTACCAGTTTATTTACCACTAGCAAAAT
Seq C2 exon
TTATTTGAAAGTCAGTGTCATACCTAGTGAGATTTCCATCCTGGTCTATGCTCTTTCGATGCTTCCTTCTGCTCACCTGGACGAAGTGAGGATGTCTCAGATTGAAGCAGTTTTGCCACAGTGTGACCTATATGACCTGAATATTTTTGCAACATCTGTTTTAAGATGTATTCAGTATGATCACGTGTATCTGAATAATATTCCTGCGAAACAGTTGAAAGTACTTCAAAAATTAGATCACTATGGTCATCAGAGACTACAAGAATGTAAAAGTTTGAATCTGTTATGGGAAGAAGTTAAATCTTTAAAAGGAGACTGGTTTGCTGATTCACTTCTTGAAGAAACAGTTGTTACCTTACAGCGTCTGATGGATGAAATGAATTACATCAATGTTGCAGGGATTGCATCTTTCATTTCTAGAACCAACTACCTCAGTACTTCACTACTTGATAAGATAGCCTCAGTGGTCCTTCAACAGATTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010743_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.111 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000055855fB2706
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCAATTCTGCATAAACATTTGGA
R:
TCACACTGTGGCAAAACTGCT
Band lengths:
254-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development