BtaEX0014235 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000595 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr7:18044058-18045245:-
Coord C1 exon
chr7:18045123-18045245
Coord A exon
chr7:18044302-18044427
Coord C2 exon
chr7:18044058-18044180
Length
126 bp
Sequences
Splice sites
3' ss Seq
CCTCCTTTGAGTCCCTTTAGACA
3' ss Score
3.41
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
ACCTGGATGAATGCGCCTCCAAGGAACATGGGTGCAGCCCGAGAGCTGACTGCCTCAACGCCCCCGGCTCCTACCGCTGTGCCTGTCGCCTGGGCTTCTCTGGGGATGGCTTCTCTTGTGAAG
Seq A exon
ACAGGGACGAGTGTGCAGAGAATGTGGCCCTTTGCGAGAATGGGCAGTGTCTCAATGTCCCCGGCGGGTACCGCTGCGAGTGCGAGATGGGCTTCAGCCCCACCAAGGACCAGCATGCCTGCCAGG
Seq C2 exon
ATGTGGATGAGTGTGTGCTCAGGAACATCTGTGTGTTCGGGAGCTGTGAGAACCTGCCGGGGATGTTCCGCTGTATCTGCGACGAGGGCTATGAGCTGGACCGCGGTGGTGGCAACTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000595-'34-37,'34-36,35-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGATGAATGCGCCTCCAAG
R:
CTGTGCAGTTGCCACCACC
Band lengths:
244-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development