BtaEX0014241 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000595 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr7:18035801-18041679:-
Coord C1 exon
chr7:18041611-18041679
Coord A exon
chr7:18040614-18040739
Coord C2 exon
chr7:18035801-18035926
Length
126 bp
Sequences
Splice sites
3' ss Seq
GCTTCCTCACTTCCTGACAGACA
3' ss Score
7.05
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
CTGAGTACAGAACCCTGTGCCCAGGGGGTGAGGGCTTCCGGCCTAATTCCATCACTGTCATCCTGGAAG
Seq A exon
ACATTGACGAATGCCAGGAGCTGCCAGGGCTGTGCCAGGGGGGCAACTGTGTCAACACCTTTGGCAGCTTCCAGTGCGAGTGCCCACCCGGCTACCACCTCAATGAGGATACCCGCATCTGTGAGG
Seq C2 exon
ACATCGACGAATGCTCTGCACACTCAGGCATCTGTGGCCCTGGAACCTGCTATAACACTCTGGGGAACTACACTTGTGTCTGCCCTGTGGAATACCTGCAAGTCAACGGTGGCAATAACTGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000595_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.9=20.8)
A:
PF126622=cEGF=PU(83.3=46.5)
C2:
PF126622=cEGF=PD(12.5=7.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCCCAGGGGGTGAG
R:
TATTGCCACCGTTGACTTGCA
Band lengths:
172-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development