RnoEX6058856 @ rn6
Exon Skipping
Gene
ENSRNOG00000043219 | Fbn2
Description
fibrillin 2 [Source:RGD Symbol;Acc:620910]
Coordinates
chr18:53113302-53115072:-
Coord C1 exon
chr18:53115004-53115072
Coord A exon
chr18:53114430-53114555
Coord C2 exon
chr18:53113302-53113427
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGGACTGTCTCCTCTTGTAGACA
3' ss Score
9.16
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
CTGAGTACTATACGCTGTGTCCTGGTGGGGAAGGCTTTAGGCCGAACCCCATCACGATCATCTTAGAAG
Seq A exon
ACATTGACGAATGTCAGGAGTTACCAGGGCTCTGCCAGGGTGGAAACTGTATCAACACTTTCGGGAGCTTCCAGTGTGAGTGTCCACAGGGTTACTACCTCAGTGAAGAAACCCGCATCTGTGAAG
Seq C2 exon
ATATTGATGAGTGCTTCGCCCATCCCGGCGTGTGCGGACCTGGAACCTGCTACAACACTCTGGGGAATTACACTTGCATTTGCCCGCCCGAGTACATGCAAGTCAACGGAGGACACAACTGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043219-'33-38,'33-37,34-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.9=20.8),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGTACTATACGCTGTGTCCTG
R:
CATGCAGTTGTGTCCTCCGTT
Band lengths:
194-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]