GgaEX0021445 @ galGal4
Exon Skipping
Gene
ENSGALG00000014686 | fbn2
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C3A6]
Coordinates
chrZ:56598589-56622266:-
Coord C1 exon
chrZ:56622198-56622266
Coord A exon
chrZ:56621413-56621538
Coord C2 exon
chrZ:56598589-56598714
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGTCTTTGTTTTTAGACA
3' ss Score
10.44
5' ss Seq
AAGGTTGAG
5' ss Score
1.33
Exon sequences
Seq C1 exon
CGGAGTACAATACTCTTTGTCCAGGAGGAGAAGGATTCAGACCAAATCCCATTACTATTATTTTAGAAG
Seq A exon
ACATTGATGAATGTCAGGAGCTGCCAGGTCTCTGCCAAGGTGGAAATTGCATCAATACTTTTGGCAGCTTCCAATGTGAATGTCCAAAAGGCTACTACCTCAGTGAAGAGACAAGAATCTGTGAAG
Seq C2 exon
ATATTGATGAATGTAAGGTCATGCCAAACCTTTGTAGACATGGACAATGTATCAACACTATGGGCTCATTCCGCTGCTTTTGCAAAGTTGGCTATACAACTGACATAAGCAGCACATCTTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686_MULTIEX1-4/22=3-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.9=20.8),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATACTCTTTGTCCAGGAGGAGA
R:
CACAAGATGTGCTGCTTATGTCA
Band lengths:
186-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]