BtaEX0014400 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000712 | FBXW2
Description
Bos taurus F-box and WD repeat domain containing 2 (FBXW2), mRNA. [Source:RefSeq mRNA;Acc:NM_001076974]
Coordinates
chr8:112077917-112089639:-
Coord C1 exon
chr8:112089604-112089639
Coord A exon
chr8:112089393-112089501
Coord C2 exon
chr8:112077917-112078426
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTGCCTTTCTCTCGCTGCAGGCG
3' ss Score
11.23
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GAGGCTGCGGACCCGGAGCGGCGGCCGCAGGTCCAG
Seq A exon
GCGCCATGGCTGCGGAGCGGACCCGGCCGCTGCGAGGCTCTGGCGGCCCGAGCGCGCCTAGTTGGTGTGAGCCCGGCGCGAGGTCCCGGGCCCCGGGGCGCTCGCTCAG
Seq C2 exon
GTAAATTTTTCCATAACCTTATGGAGAGAAAGGACTTTGAGACATGGCTTGATAACATTTCTGTTACATTTCTTTCTCTGACGGACTTGCAGAAAAATGAAACTCTGGATCACCTGATTAGTCTGAGTGGGGCAGTCCAGCTCAGACACCTCTCCAATAACCTGGAGACTCTGCTCAAGCGGGACTTCCTCAAACTCCTTCCCCTGGAGCTCAGTTTTTATTTGTTAAAATGGCTCGACCCTCAGACGCTACTCACATGCTGCCTCGTCTCTAAACAGTGGAATAAGGTGATAAGTGCCTGCACGGAGGTGTGGCAGACCGCCTGTAAAAGTCTGGGCTGGCAGATAGATGATTCTGTTCAGGACGCTTTGCACTGGAAGAAGGTTTATTTGAAGGCTATTCTGAGAATGAAGCAACTGGAGGACCATGAAGCCTTTGAGACCTCATCTTTAATTGGACACAGTGCCAGAGTGTATGCACTTTACTACAAAGATGGACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000712-'0-3,'0-0,1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF129372=F-box-like=WD(100=29.3),PF0040027=WD40=PU(68.6=14.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development