RnoEX0035463 @ rn6
Exon Skipping
Gene
ENSRNOG00000018687 | Fbxw2
Description
F-box and WD repeat domain containing 2 [Source:RGD Symbol;Acc:1310460]
Coordinates
chr3:13891723-13898468:-
Coord C1 exon
chr3:13896924-13898468
Coord A exon
chr3:13896714-13896822
Coord C2 exon
chr3:13891723-13892232
Length
109 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCCCTTTCCCCGCAGGCG
3' ss Score
14.14
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
ATTTTGTTTGGTTATTTATGCTGTCTTCCTCCTACGACTAGACGTAGACCTCACGCAGTTAGAAATTTGTTTAACTGTGTGCGAACCATGTTTGGGAGGAACCAACTGTCAATGGGTTGTTCGAATAGTCACATGTCAATTTGGAGCCTGAGCTCTTTCTCCAAGGTGAAAACTGTTAAGATGAAATATTACCCTAACTTGGTGAAAAAACAAAAGTAGATGAGGAAAATAAACATTGTGCAAATCTGGAGAGCAGCCTTGAAAAGAAGCGTTAGTTCAGGAGCACAAGGTGTAAGCGCTGTCAGGTGGTACCGGACAAACTGCCCTTTTCCACAGTCGCGGCCATTCTTTCCCACGTACCCCGCGGGCAGGAGGAGCCGGAAGTAGTGCTGCTTCCGCCCGACGCTGGGCGCCAGGAGGGACGCGCGGAGATGACGTAGCAGCACCGGAAGCCGCTCCCCTGTGAGGCTGCGGACCCAGAGCAGCGGCCGCAGGTCCAG
Seq A exon
GCGCCATGGCTGCGGAGCGGACCCGGCCGCTGCGACGCTCTGGCGGCCCGAGCGCGCCTAGTCGGTGTGAGCCCGGCGCGAGGTCCCGGGCCCCGGGGCGCTCGCTCAG
Seq C2 exon
GTAAATATTTCCATAACCTTATGGAGAGAAAGGACTTTGAGACATGGCTTGATAACATTTCTGTTACATTTCTTTCTCTGACGGACTTGCAGAAAAATGAAACTCTGGACCACCTGATTAGTCTGAGTGGGGCAGTCCAGCTCAGGCATCTCTCCAATAACCTGGAGACTCTCCTCAAGCGGGACTTCCTCAAACTCCTTCCCCTGGAGCTCAGTTTTTATTTGTTAAAATGGCTCGATCCTCAGACTTTGCTCACATGCTGCCTGGTCTCTAAGCAGTGGAATAAGGTGATAAGTGCCTGCACAGAGGTGTGGCAGACTGCATGTAAAAATTTGGGCTGGCAAATAGATGATTCTGTTCAGGACGCATTGCACTGGAAGAAGGTTTACTTGAAGGCTATTTTGAGGATGAAGCAACTGGAGGACCATGAAGCCTTTGAGACCTCATCATTAATTGGACATAGTGCCAGAGTGTATGCACTTTACTACAAGGATGGACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018687_MULTIEX2-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF129372=F-box-like=WD(100=29.3),PF0040027=WD40=PU(68.6=14.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTAGTGCTGCTTCCGCC
R:
GGACTGCCCCACTCAGACTAA
Band lengths:
258-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]