RnoINT0060089 @ rn6
Intron Retention
Gene
ENSRNOG00000018687 | Fbxw2
Description
F-box and WD repeat domain containing 2 [Source:RGD Symbol;Acc:1310460]
Coordinates
chr3:13891723-13896838:-
Coord C1 exon
chr3:13896714-13896838
Coord A exon
chr3:13892233-13896713
Coord C2 exon
chr3:13891723-13892232
Length
4481 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
AATATTTTGATGTGCCACAGGTA
3' ss Score
7.32
Exon sequences
Seq C1 exon
CTCCCTTTCCCCGCAGGCGCCATGGCTGCGGAGCGGACCCGGCCGCTGCGACGCTCTGGCGGCCCGAGCGCGCCTAGTCGGTGTGAGCCCGGCGCGAGGTCCCGGGCCCCGGGGCGCTCGCTCAG
Seq A exon
GTCAGTGCCGCGCGGAACACGGCTCCGGGAGCAGGGGACCAAGGGAGTCACGAACGAGCTGAGCGACTCGGAGATAATTTTAGAGACAGGAAAATTAGAGCTAAGAGTTCCTGCCTTCAGGTGCCTAGCAGCGAAACGAGTTAACATTGACGCCCCGAGGCTACCTCTTTAAAGACGATTCATTGTAGACAGGTGGTTTATAAAATGCAGAACGTTGTAGTGTGTGTAGGAAGGCACCATGCTTGTGGGTATGCCTTGAAAACAGGTGTGTATTTGAGATGATGCTTTTTTTAAACAGGGGAGAAATGACAGTATTAGTTGTACATTATAACAGTAACTGGCTTATAGTGTGCCAAGATACTGTGCAGAACTCTTTGTTCTGTTTAATCCTCACGAACTCTAGTAGGTAAAACAGTACCAGGCTACAGTTTACAAGTGAGGAAATTCGGCTTGAAACACATGAAATGATTTGTCTATAGTTACCCAACAAGTGAAATTTCAGAGCCCATGTTTTATAAACATTATTTGTATTCTTTCAAAGTTTTAAAAATTAGTCTCCAAACTAACGGCTTTTAGGTCAAGGGTGGTTATGGACTCCAGCAGTCCCAGCATTTAGTCCGCTTTGTGAATTGTGAGACCAGCCTGGGCTTCATTTGCAAAAGCCTGTCTCAAAACAAAACAAAACAAAACAAAAAGGGAAGTAAAAGCAAATTTCTAAATACCACAAGTAAAAAGAGGAAAATATTTTAAAAAATAGTGTAGTCACACGATTTTAAATACAAACAGGTGTTTTGTTAGAAGGAGTGAGTTAAAACTCACTCTGCCTCCCAGTGTTGGGATTAAAGGCATTGTGTCACCACTCCTGGCCTGCCTCTGTACCTTTTAACTGGTTGTACGTGGGAGGAAAGTGGCGGCAAGGAGACAGTCTTCCCAACAACAATGAATGTTTATCTTTTGTTCTTTAAAAAAGGTATTTTTAGATCTATATTATACAGATCTATATCTGTGTCTATATGTAGGATATTGAAGGGTCATGTATATGCCACTGTGTATTCGGTGTGTGTGTGGTTGTGTGTGTGTGTGTACACAACTTTATGGAGTCAGTTTCCTCTTTCCAGCCAGATCAATCAGGCTTTTCAGTGAGCACTTTTACTCACTGAGCCATTTCACAGGCCCAAAGTTTTAATTCCTTACTCGCACAGGGTAGAAGGAGGGGAAACATTCAAAGTTTGCACGCACGCATGTGCTGTGCCTGTAAAAGATGCAGGAGTGGAAGTTTTTGCCTTAGGAGGGTGAAGACGGAGTAATGTTGAACTGTTGCTTCCTGTGTAACTCTGGTAGAGCCGCTCTACCTCTTGGGCCATAGTTTTTTGTTAGGGCAGCAGTACCTACATTTTCTATGATCCATGTTAAGATCAAATGTGATATTTGCAGGTACTGCTACAGTTATTAGAACCAACATAATGTAATTGCTTAGAGGCAGAAACCAAATGCTCTCACCTCCCAGGTTAGGAATGTTTACCATACTACACATTCCTGAGAGCTTTGTGATTATTTCTGTTAAGGACTGGAGGCAAGTTAAATGTTGACATTGAGAAGGGTGAGAGGAGCGAGATAGCAAGGGGTGTGAATAGAGAGAAGAGAACCAAGGAAGCAGTCATACATGTCTCTGCATCGGTTCTGATTCTCACGCTGCTAAGTTAGAATAGCTTCTGTTTCACAAACGGGAGCTTAGACATTATTTGACCATTCCCACAATCACATAGGAAGTTGCTGAATCAGCTTTAAAAAAAAAAAAGACTGGCCTAGCTCTTTTATTTCTCCCAGCTTCCTCTGTACCCAGCAGTCCTAGCTGGACTAATGGGAAACACTGTCCTGGGGTTGGCTATTCACTGTTGCTCTGATGGTTGAAAGCACGTCCTCCTGTTGAAGTCCCATTTCCTGAGACTTCCTGTGGAAGGCTTCTGTGAACTGCCAGTACACGGGATTATTCCTAGAAGTTCTGTGAACAAGTTCAATTTACACCCGTGGCTTTAAGGAAGTTTCCTCCAAAACTAGTGGACTCTTTTAGAAAAGTAAGAATTGGTGGGTTTTACTAGTATGCTCTGCAGAGTTAAATGACTTTAGACAGGCTCTGTGGCACACACCAGATCTCAGGTTAGGCCAGTTGGAGCTAAATGACGATGACCTACCTCAGTAAAAGACAAAGTGAAACAAAACAAAACAAACAAACAAACAAAAAAAAACAATGTCCAGAGGCTCAGGTGCCCATCTCATTGTCTGTGGAACATTCTTAAAAGTAGGATTTCTGGATGTGTTACAGAGGGACTGTGCAAAGTAAGGTTCAGACAAAAAAGGCTTATTTTTGAGTTGAGTTGGTAAACTTATGTGAACAGGTTATTCTTTTAGCAGGTAGAGAACTAGACATTTCATATAAATTAATATGTCCTTTAGCCCCAAACCTGACTTTGAATACTGTCTTCAGCAGCCCAGGTTGTTAAGTGGAGACAATGTGTTTGAAACATTTGGTTGAGTCTAATAATACACTGGGTTTTGTCTGAAATGTTCTTGCCAAAGTAGAAGCAGAAACCTGATTTTACTCACCTTAGATGAACTAAGTTGGAAGATGAAATCTGACTCTTTTTTATAGATGTAGTTTAGGTAACATGTCTGGAAAGAAATCTATTTTCTCCCACATTGAACTTTTTTTTTTTAATTAGATGACAATCTTGTAAATAAAGAGAAGAAAAAAATCCCCCCCTCCCCAAAGCCACTGAGCTTTCTGAATATAATAAAAATCAAACCACATTCCCATGTAACTGTTCAATATCCGCATCTATCAACACAAAACTGTTCTTAATTGGTGTCCTTTTCCTCTTCCCATTAGTTTAATCCTATTTATTTTCCCATTTTTCAAAACAGTTTTCTCTGTATGGCCCCAGCAGTCCTGGAACTCTTTGTAGACCAAGCTGGTCTTGAACTCTACCTACCTCTGCCTCCCAGATTCCGTGATTAAAGGTGTATGGCACCACCCCTAGCTTTTAATCTTCATTGTAAAGAATACGTTGGCACCTGTTGATATATCAGGTACTTTAACATTCCTTTGTCCCATTGAGCCCTGAAAAATGTGCTATATTTCCTAAAATGGTATAATCAGGTAGACAGTGTCTGCAGGTCTTATTACCAAGTTAGATTCTTAAAAAAAGAGAGGTCTGCATTTTCTTCCTCCTCCTCCACCTCTAATGGCTTTTACAGTCTAGACTAGGCTGACCTAACTACATATCCAAACCTGGCCTTGAACCTTCAATCCTCTTGGCAGTGGGATTATAGGTGTGCCAGCTGCTGTGCTGATCTGGAGAACACAGGCTCTGTTCTGTCCTGTGGTTTCACTAACTTTATTACCACAGGTACTTAGTGAGCAGCTTGCAGTTTCTTCATTTGCAGAGTAAAAATGACACGTTTTTAGTGAGCATCCAGGTGACGATATTTTGCTTTGTATATTTGAAATGTGGTATTACAATATTTCCCAGATTGGTCACCAACTTAGTTATCTTGTAAGGGCAGCCTCTAAGAAGCTAGGATCATATGTTTTTACTGTGCCAGCATCATGGGGATTATTAATTTGTTTTATCTTACAGGACCCTTGTGGCTCTGTAGGGAACAGTTAAGAGTTGTCACTAAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCACTTGCCTAGCAAGCTCAAGGCCCTGGGTTTGGTCCTCAGCTCCAAAAAAAAAAAAAAAAAAAAAAAGAGTTGTCACTAGCTTATGTGAGGCTTATAAAAGCAAACTGTGTAGCCTTTAGTAATCCATGTTCTGACAGATAGCACTGTAAGGAAATGGAATACCAGAATACCTGCGGCACATAACTTATTACACGTCTGCTTTTTCTTTCTTCACGTCTTCTTGCTTCGACATCTATTGTAGAACCGAGTCATTAGTTTTGTGATTGGGGTGGCAGGTCAGGATGTACTTAACATAACTGATACAGAGGTCACAGCTCCAGAGATTTGTGTATTACATCCTGGTGCTGTTCTTGTGATTTTACTTCCCAAACAGAGTGCATGTAGTAAGGCAGTTACTAAGGAGGCAGTTTTGTAGCAGTTTGAGTGGAAGGTTGTGTGTATGTAGACTAGAATACTCTTTATGAATGAATGTTCTTTAAATCTTTTTGGTGACAGTGCATGTGAAATGTGTTAGACTTCAAAAGGAGCAAGTCACACACTGACATACGTTCCTCTGACATGTTTACTATATCATGATTTTTAAAAATGTTTTCTTAGATGCATTTTCTTTTGTGTTCATGGGAACTTTCAGATAAAGCATATTAACTGTAAAGTAAGCATAAAGTTGTAATGCCAATTTTTACACTAATTTTTAATACTTCATTTATTAGCAGTCTTGCTTGAACAATCTTTTTGAACAGAACTAATACAATATTTTGATGTGCCACAG
Seq C2 exon
GTAAATATTTCCATAACCTTATGGAGAGAAAGGACTTTGAGACATGGCTTGATAACATTTCTGTTACATTTCTTTCTCTGACGGACTTGCAGAAAAATGAAACTCTGGACCACCTGATTAGTCTGAGTGGGGCAGTCCAGCTCAGGCATCTCTCCAATAACCTGGAGACTCTCCTCAAGCGGGACTTCCTCAAACTCCTTCCCCTGGAGCTCAGTTTTTATTTGTTAAAATGGCTCGATCCTCAGACTTTGCTCACATGCTGCCTGGTCTCTAAGCAGTGGAATAAGGTGATAAGTGCCTGCACAGAGGTGTGGCAGACTGCATGTAAAAATTTGGGCTGGCAAATAGATGATTCTGTTCAGGACGCATTGCACTGGAAGAAGGTTTACTTGAAGGCTATTTTGAGGATGAAGCAACTGGAGGACCATGAAGCCTTTGAGACCTCATCATTAATTGGACATAGTGCCAGAGTGTATGCACTTTACTACAAGGATGGACTTCTCTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018687:ENSRNOT00000025399:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF129372=F-box-like=WD(100=29.3),PF0040027=WD40=PU(68.6=14.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]