GgaINT0125784 @ galGal4
Intron Retention
Gene
ENSGALG00000000864 | FBXW2
Description
F-box/WD repeat-containing protein 2 [Source:RefSeq peptide;Acc:NP_001007843]
Coordinates
chr17:10382772-10384994:-
Coord C1 exon
chr17:10384664-10384994
Coord A exon
chr17:10383282-10384663
Coord C2 exon
chr17:10382772-10383281
Length
1382 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
AGTATTTTGATGTACCGCAGGTA
3' ss Score
6.53
Exon sequences
Seq C1 exon
GGAGGATGCGCCGGAAGCTGCCTGACTACGGAGCGTCGTGAGCTTTGGTGGAGTGCTTCCCCTTGGGGTGACGACCGGTTCGCTCGGTGCAGGGGCCCCGCCCCTCCTCCGGCGCCGGAGGTGACCGAGGCTCCCATCGCTGTCCGAGGGCGACAGCCTTCCGTGGGTTCCCGCAGGCTGCGGCGCGGACTGCGGAAGTAGCAGGAGACCGTCCTTCTGCTGTGGGAGCGATGGCCGTGGGGAAGCCCCAGCCCCTGCCGGGCACTGGAGGACCGTGCGAGACGCGGCGGCTGCCTGCTGAGGGACGCTGCGCGCCCGGCCGCTACCTGAG
Seq A exon
GTGAGCGCCGCGGCCCACTGGAGCCGTGTGGGCGGCGCCGACGGCTGTGCAGCGCGTGGGCGGAAGGCGCTGGAAGTCTCCGGGCTGCGCCGTGCTCTGTGCGAGCGGAGGTGGACGGGAGCGGCCGTGAGTGGAGCGGTTGCGGATAACGCGTGGAGCAGCGTGCACATGGCACTGGCTGCAGTTAGAGATTGCTTGTTCTTAGGAAAACACGTGCGTATTAGAGTGGCAAACACAGTCTGCCGAATGTGCTGAAGAAAGCCCTTAAGTTCTGTTAGTAGTAAAAGTTACTGTATGAACTTCTAACATGATAGGAGCAGCTGTTTCTGTGTATTTAATTAAGAAGGCCTTAAGATTATTTTTAAGGTATTATTCTTAAGATATTATCAAGAAGTAATACTTCTCTACATTTGTAGCCTTTCGTAGTGAAGACTACTTCTCTATAATTTTCTGTGTCATGTTCAGAGATGTACTTCAAGGTTTTACTCCATGAAGGTATAAGCATACGTATATGAGCTCCCCTTCAGATTCCCCAATTCATTTGATTTGGGAGATTCTATGAATTAAATTCAGTTAGTTATCTAATGTGTTGAATGAGATCTCCCACAGAAAATAAATCTGGCTTTTTAACTGTTTGTCCCATGCTCATCTTTATAATCATTTGCACATGCCTCTTGTAGGAACTTGAGATGCCACAGCATATAAAAATAAATACAGGTCACATAGTTTGAGAGGTAGCTTTTCAAGCTGTCAGTTTCACAGGCCTGTTCATTGGAAATATACTGAGAAAGCAAGGGGGAGAGGGGGAGTTTGTTTTATAAGGAAAAAAAAAAAGACATCAAGGAGGCACAAAAGAGGTTACATGTCCTTCAACACAATTCTCCAGACATCTCTTTGTATCTTCTTTAAGCACAAAGCAGGTAACTTTTTATGAAGTAGTTACAACAAGAGTCTGCATTCATTCAGTAATTAGCTTCTTATTGTTCTGTTTTTATGCTTTATTTTCTTCCTTTTTTCAACTAAATGATAAGTAAACTGTAAAACAGCATTTATTCACTAAAGTAGATTTAAAACTTGAATCAACTCTTACTGGATTCAGAATGTGAAAATGGTAACTCATTACATGAAAGATGTAAACATTCATAGTGAATGCTAGCATGCACTGTCTTGTACAACTCACTTCTAAGTCTTAAGTAGGACAAACGGTAGTTCAAAGTATGTGTGAATGCTTCATACTAACCTAATGAATATTTTGTGCTGTGATTGGTCACTTCAGTCTGTGCTTTAACATGCCATTTGAAATACTGATGTACCAGTAATAATGATGTGATGCTTACCTTGTTTTCTGAACAGAACTAATACAGTATTTTGATGTACCGCAG
Seq C2 exon
GTAAATTTTTGCATAACCTTATGGAGAAAAAGGACTTTGAAGCATGGCTTGATAACATTTCTATTACATTTCTTTCTCTGACGGACTTGCAGAAAAATGAAACTCTGGATCACCTGATTAGCTTGAGTGGAGCAGTCCAGCTCAGGCATCTCTCCAATAATCTAGAGATTCTTCTCAAGAGGGACTTCCTCAAACTTCTCCCACTGGAACTTAGTTTTTATCTGTTAAAATGGCTTGATCCTCACACCTTACTCACATGTTGCCTCGTCTCTAAGCAGTGGAATAAGGTTATAAGTGCCTGTACAGAGGTGTGGCAAACTGCATGTAAGAATTTGGGTTGGCAAATAGATGACTCTGTTCAGGATCCTCTGCATTGGAAGAAGGTTTACCTAAAGGCTATTTTAAGGATGAAGCAACTGAAGGACCATGAAGCCTTTGAGACATCCTCTTTAATTGGACACAGTGCCAGAGTATATGCACTTTACTATAGAGATGGTCTTCTGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000864:ENSGALT00000001266:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF129372=F-box-like=WD(100=29.3),PF0040027=WD40=PU(68.6=14.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGCTTTGGTGGAGTGCTT
R:
TCAAGCCATGCTTCAAAGTCCT
Band lengths:
346-1728
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]