GgaALTD1009721-1/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000000864 | FBXW2
Description
F-box/WD repeat-containing protein 2 [Source:RefSeq peptide;Acc:NP_001007843]
Coordinates
chr17:10382772-10384764:-
Coord C1 exon
chr17:10384664-10384764
Coord A exon
NA
Coord C2 exon
chr17:10382772-10383281
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
AGTATTTTGATGTACCGCAGGTA
3' ss Score
6.53
Exon sequences
Seq C1 exon
ATGGCCGTGGGGAAGCCCCAGCCCCTGCCGGGCACTGGAGGACCGTGCGAGACGCGGCGGCTGCCTGCTGAGGGACGCTGCGCGCCCGGCCGCTACCTGAG
Seq A exon
NA
Seq C2 exon
GTAAATTTTTGCATAACCTTATGGAGAAAAAGGACTTTGAAGCATGGCTTGATAACATTTCTATTACATTTCTTTCTCTGACGGACTTGCAGAAAAATGAAACTCTGGATCACCTGATTAGCTTGAGTGGAGCAGTCCAGCTCAGGCATCTCTCCAATAATCTAGAGATTCTTCTCAAGAGGGACTTCCTCAAACTTCTCCCACTGGAACTTAGTTTTTATCTGTTAAAATGGCTTGATCCTCACACCTTACTCACATGTTGCCTCGTCTCTAAGCAGTGGAATAAGGTTATAAGTGCCTGTACAGAGGTGTGGCAAACTGCATGTAAGAATTTGGGTTGGCAAATAGATGACTCTGTTCAGGATCCTCTGCATTGGAAGAAGGTTTACCTAAAGGCTATTTTAAGGATGAAGCAACTGAAGGACCATGAAGCCTTTGAGACATCCTCTTTAATTGGACACAGTGCCAGAGTATATGCACTTTACTATAGAGATGGTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000864-0-0,1-0,2-0-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF129372=F-box-like=WD(100=29.3),PF0040027=WD40=PU(68.6=14.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCCTGCTGAGGGAC
R:
TCCAGTGGGAGAAGTTTGAGGA
Band lengths:
251-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]