MmuINT1010195 @ mm10
Intron Retention
Gene
ENSMUSG00000035949 | Fbxw2
Description
F-box and WD-40 domain protein 2 [Source:MGI Symbol;Acc:MGI:1353435]
Coordinates
chr2:34822558-34826073:-
Coord C1 exon
chr2:34825962-34826073
Coord A exon
chr2:34823068-34825961
Coord C2 exon
chr2:34822558-34823067
Length
2894 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
AATATTTTGATGTGCCACAGGTA
3' ss Score
7.32
Exon sequences
Seq C1 exon
CAGGCGCCATGGCTGTGGAGCGGACCCGGCCGCTGCGACGCTCTGGCGGCCCGAGCGCGCCTAGTCGGTGTGAGCCCGGCGCGAGGTCCCGGGCCCCGGGGCGCTCGCTCAG
Seq A exon
GTCAGTGCCGCGCGGAACACGGCTCCAGGAGCAGGGGACCAAGGGAGTCACGAACGGGCTGAGAGACTCGGAGTTAATTTTAGACAGGAAAATTAGAGCTAAGAGTTCCTGCCTTCTGGTGCTTCGGTTTTTCCTAGCCGCGAAACGAGTTAACATTGATGCCCCAAGGCTAGCACTTTAATTAATTAAAGATGATGAAATGTGGACAGGTGGTTTATAAAATGCAGAACGTAGTAGTATGTGTAGGAAGGCACCATGCTTGTGTGTATGCCTTGAAAACAGGTGTGTATTTGAGATGATGCTTCTTTTTAAAAGGGGAGAAATGACAGTATTAGTACTACATTATAACAGTAACTGGCATTTATTGTAGGCTTATAGTGTGCCAGATACTGTACAGAACGCTGTTTAACCCTAACAATCTTGTAGGTAAAACAGTACCAGGCGACAGTTTACAAGTGAGGAAATTTGGCTTGAAACACAAGAAATGATTTGCCCATGGTTACCCAACAAGTGAAATTTCAGAGCCCGTGTTTTATAAACATTATTTGTATTCTTTCAAAGGTTTAAAAGATTAGTCTCTAAATTAATGGCTTTTAGGCCAAGGGTGGTTGTGGACTCCAGCAGTCCCAGCACTCCAGTCTTGTGAATTGTGAGACCAGTCTGGGCTTCACTGCAAAAGCCTGTCTCAAAAAACAAAATAAAACAAAAAGCAAAACAAAAAGGAACAGTAAAAACAATTTTCTAAATATCACAAGCAAAAGGAGGAAAAGATCTTTACAATAGTGTAGTCACATGGTTTTAAATACAAAAAGATGTTTTGTTAAAAGGGACTTCATCCCTTTTCTTTCCAGTTCTCTCTTGAAGCAATATTTAATCAGCTTCCTCAATATTCACAGAATACTTTTCTGTACACATAATCCTCTGTGTAGACCAGACTGGCCTCAAACTCACAGAGCCTGCTTCTGCCTCCGAGGGCTGGGATTAAAGGCATGTATCACCACGCCTGGCCTACCTTTTAACTGGTTGTGAAAGGGGAGGCAAGGAGACAACCTTCCCAACAACAATGAGTATTTATTTTTTGTTCTTTAAAAAAATGATTTTTAGTGTGTCTATATGTCTGTGTCTATGTAGGATGTTGGAGGGAGCATGTATATGCCAGTGTGTGCGTGCGTGGTTTTGCATACAGCTTTATGGAGTCAGTTTTCTCCCCCCAAATTTACGTGGGTTTTGGGTATCCAACCCAGGTCATCAGGCTTTTCAGTAAGCACTTCATCTCACAGGCCTGAAGCCTTGATTCCTTACCTGCATAGGTTATGCAGACTAGAAGGAGGGAAAACATTGAGTTTACACCCATAATGCCTTGCCTGTAGAAGATGCAGGTGGAGATTGGGTACTACTGAGCTGCTGCTCCTGTGTAACTCTGGTTGAGCCACCCTGCCTCTTGGGCCCTAGCCTCTTTGTTGGTAAGGGCAGTAGTATTGACTTCTTCTATGAACCATGTTAGAATCAAGCGTGATATTTTTAGGCGCTGCTTCAGTTATTAGGACCAACATAAATATAATTGCTTAGAAGCAGAAACCAAATTCATGCTCTCATCTCCCAATTTAGGAATGTTTATCATACTACACATTTCCTCAGAGCTTTGTGATTGTTTCTGTTGAGGACTGCAGAACAAGTTAAGTGTTTACATTGAGAAGGGTGAGAGGCACAAGATAGCAAGGGGGGTGTGCAGAAAGAAAAGAGCTAAGGAAGCAGTTAGCGGCTTAGATGTGCCGTATCACTGCAGCTTTTCTGATTCGCACACTGCTAAGTTAGAATAGCTTCTGTTTTACAAATGGAAGCTTAGACTTTAGTTGAGCATTCCATGATCACATATTTCCCAGGTTGATCTCTAACTTAGTTATCTTGTAAGGGCAGCCTCTAAGAAGCTAAGATTGTATGTTTCACTGTGCCAGCATCATGGAGATTGTTAATTTGCTTTATCTTACAGGCTACAAGGACCCTCATGGCTCTGTAGGGAACACAGTTAAGAGCTGTCACTAGCTTATGTGAGGCTTATAAAAGCAAACTGTAGCCTTTAGCAATCCATGTTCTAACAGACAGTACTGTAAAGGAATGGAATACCAGAATACCCAAGGCACACAGCTTAGCACACATTTGTTTTTTCTTTCCTCACATCTTTTTGCTTCAACATTTATTGTAGAACCAAATTTTGTGATCTGGGTGGCAGGTCAGGTTGCACCTAGTAGCATAACTGATACAGAGGTCACAGCTCCAGAGATTTGTATATGTTATATGTTGGTGCCATTCTTGTAACTTCCCAAATAGAGTGCATTTAGGAAGTAAATTACTAAGGAGGTAGTTTTGTAATGGTTTGAGTGGAAGGTTGTATGTAGACTAGAATACTCTTTATGAATGAATGTTCTATAAATCTTTTTGGTGACAGTGCATGTGGCATGTGTTAGACTTAAAAAGGAGCAAGTCACACACTAACATGTTCCTCTGACTTGTTTACTATATCATGATTTTTAAAAATATGTTTTCTGCTGGGGAGTGGTGGTTCACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGATGGATTTCTGAGTTTGAGGCCAGCCTGGTTTACAGAGTGAGTTCAAGGACAGCCAGGGCTACACAGAGAAACTCTGTCTTGAAACCCCCCCCAAAAAAAAACCCAAAAAAACTGTTTTCTTAGATGTATTTTCTTTTGTGTACATGGGAACTTTCAGATATAGCATATTAACTGTAAAGTAAGCATAAATTTGTAATGCCAATTTTACACTAATTTTTAATACTACATTTATTATCAGTCTTGCTTGAAAAATCTTTTTGAACAGAACTAATATAATATTTTGATGTGCCACAG
Seq C2 exon
GTAAATATTTCCATAACCTTATGGAGAGAAAGGACTTTGAGACATGGCTTGATAACATTTCTGTTACATTTCTTTCTCTGACGGACTTGCAGAAAAATGAAACTCTGGACCACCTGATTAGTCTGAGTGGGGCAGTCCAGCTCAGGCATCTCTCCAATAACCTGGAGACTCTCCTCAAGCGGGACTTCCTCAAACTCCTTCCCCTGGAGCTCAGTTTTTATTTGTTAAAATGGCTCGATCCTCAGACTTTACTCACATGCTGCCTGGTCTCTAAGCAGTGGAATAAGGTGATAAGTGCCTGTACAGAGGTGTGGCAGACTGCATGTAAAAATTTGGGCTGGCAGATAGATGATTCTGTTCAGGACTCATTGCACTGGAAGAAGGTTTATTTGAAGGCTATTTTGAGGATGAAGCAACTGGAGGACCATGAAGCCTTTGAGACCTCTTCGTTAATTGGACATAGTGCCAGAGTGTATGCACTTTACTACAAAGATGGACTTCTCTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035949:ENSMUST00000028220:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF129372=F-box-like=WD(100=29.3),PF0040027=WD40=PU(68.6=14.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types