RnoALTA0015156-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000018687 | Fbxw2
Description
F-box and WD repeat domain containing 2 [Source:RGD Symbol;Acc:1310460]
Coordinates
chr3:13891723-13896838:-
Coord C1 exon
chr3:13896714-13896838
Coord A exon
NA
Coord C2 exon
chr3:13891723-13892140
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TTTCTCTGACGGACTTGCAGAAA
3' ss Score
7.2
Exon sequences
Seq C1 exon
CTCCCTTTCCCCGCAGGCGCCATGGCTGCGGAGCGGACCCGGCCGCTGCGACGCTCTGGCGGCCCGAGCGCGCCTAGTCGGTGTGAGCCCGGCGCGAGGTCCCGGGCCCCGGGGCGCTCGCTCAG
Seq A exon
NA
Seq C2 exon
AAAAATGAAACTCTGGACCACCTGATTAGTCTGAGTGGGGCAGTCCAGCTCAGGCATCTCTCCAATAACCTGGAGACTCTCCTCAAGCGGGACTTCCTCAAACTCCTTCCCCTGGAGCTCAGTTTTTATTTGTTAAAATGGCTCGATCCTCAGACTTTGCTCACATGCTGCCTGGTCTCTAAGCAGTGGAATAAGGTGATAAGTGCCTGCACAGAGGTGTGGCAGACTGCATGTAAAAATTTGGGCTGGCAAATAGATGATTCTGTTCAGGACGCATTGCACTGGAAGAAGGTTTACTTGAAGGCTATTTTGAGGATGAAGCAACTGGAGGACCATGAAGCCTTTGAGACCTCATCATTAATTGGACATAGTGCCAGAGTGTATGCACTTTACTACAAGGATGGACTTCTCTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018687-1-4,1-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF129372=F-box-like=WD(100=29.3),PF0040027=WD40=PU(68.6=14.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGTCGGTGTGAGCCCGG
R:
CCAGGGGAAGGAGTTTGAGGA
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]