BtaALTA0011665-2/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000000712 | FBXW2
Description
Bos taurus F-box and WD repeat domain containing 2 (FBXW2), mRNA. [Source:RefSeq mRNA;Acc:NM_001076974]
Coordinates
chr8:112077917-112089501:-
Coord C1 exon
chr8:112089393-112089501
Coord A exon
chr8:112078149-112078334
Coord C2 exon
chr8:112077917-112078148
Length
186 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TTTCTCTGACGGACTTGCAGAAA
3' ss Score
7.2
Exon sequences
Seq C1 exon
GCGCCATGGCTGCGGAGCGGACCCGGCCGCTGCGAGGCTCTGGCGGCCCGAGCGCGCCTAGTTGGTGTGAGCCCGGCGCGAGGTCCCGGGCCCCGGGGCGCTCGCTCAG
Seq A exon
AAAAATGAAACTCTGGATCACCTGATTAGTCTGAGTGGGGCAGTCCAGCTCAGACACCTCTCCAATAACCTGGAGACTCTGCTCAAGCGGGACTTCCTCAAACTCCTTCCCCTGGAGCTCAGTTTTTATTTGTTAAAATGGCTCGACCCTCAGACGCTACTCACATGCTGCCTCGTCTCTAAACAG
Seq C2 exon
TGGAATAAGGTGATAAGTGCCTGCACGGAGGTGTGGCAGACCGCCTGTAAAAGTCTGGGCTGGCAGATAGATGATTCTGTTCAGGACGCTTTGCACTGGAAGAAGGTTTATTTGAAGGCTATTCTGAGAATGAAGCAACTGGAGGACCATGAAGCCTTTGAGACCTCATCTTTAATTGGACACAGTGCCAGAGTGTATGCACTTTACTACAAAGATGGACTTCTGTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000712-1-5,1-4,1-3-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF129372=F-box-like=WD(100=29.3),PF0040027=WD40=PU(68.6=14.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTAGTTGGTGTGAGCC
R:
TACACTCTGGCACTGTGTCCA
Band lengths:
252-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development