GgaALTA0000353-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000000864 | Q5ZK75_CHICK
Description
NA
Coordinates
chr17:11111384-11113606:-
Coord C1 exon
chr17:11113276-11113606
Coord A exon
NA
Coord C2 exon
chr17:11111384-11111801
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TTTCTCTGACGGACTTGCAGAAA
3' ss Score
7.2
Exon sequences
Seq C1 exon
GGAGGATGCGCCGGAAGCTGCCTGACTACGGAGCGTCGTGAGCTTTGGTGGAGTGCTTCCCCTTGGGGTGACGACCGGTTCGCTCGGTGCAGGGGCCCCGCCCCTCCTCCGGCGCCGGAGGTGACCGAGGCTCCCATCGCTGTCCGAGGGCGACAGCCTTCCGTGGGTTCCCGCAGGCTGCGGCGCGGACTGCGGAAGTAGCAGGAGACCGTCCTTCTGCTGTGGGAGCGATGGCCGTGGGGAAGCCCCAGCCCCTGCCGGGCACTGGAGGACCGTGCGAGACGCGGCGGCTGCCTGCTGAGGGACGCTGCGCGCCCGGCCGCTACCTGAG
Seq A exon
NA
Seq C2 exon
AAAAATGAAACTCTGGATCACCTGATTAGCTTGAGTGGAGCAGTCCAGCTCAGGCATCTCTCCAATAATCTAGAGATTCTTCTCAAGAGGGACTTCCTCAAACTTCTCCCACTGGAACTTAGTTTTTATCTGTTAAAATGGCTTGATCCTCACACCTTACTCACATGTTGCCTCGTCTCTAAGCAGTGGAATAAGGTTATAAGTGCCTGTACAGAGGTGTGGCAAACTGCATGTAAGAATTTGGGTTGGCAAATAGATGACTCTGTTCAGGATCCTCTGCATTGGAAGAAGGTTTACCTAAAGGCTATTTTAAGGATGAAGCAACTGAAGGACCATGAAGCCTTTGAGACATCCTCTTTAATTGGACACAGTGCCAGAGTATATGCACTTTACTATAGAGATGGTCTTCTGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000864-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF129372=F-box-like=WD(100=29.3),PF0040027=WD40=PU(68.6=14.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACCGTCCTTCTGCTGT
R:
TGGACTGCTCCACTCAAGCTA
Band lengths:
175-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]