BtaEX0014624 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032427 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr18:34978429-34979641:-
Coord C1 exon
chr18:34979522-34979641
Coord A exon
chr18:34979283-34979444
Coord C2 exon
chr18:34978429-34978619
Length
162 bp
Sequences
Splice sites
3' ss Seq
CTCAGATGGGGTCATTTCAGAGC
3' ss Score
1.74
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
GAAATTGCAGAGCCACTGTTCGACCTGAAAGTGGGCATGGAACAACTGGTGCAAAATGCCACCTTCCGCTGCATCCTGGCCACCCTGCTGGCTGTGGGCAACTTCCTCAATGGCTCCCAG
Seq A exon
AGCAGCGGCTTTGAGCTGAGCTACCTGGAGAAGGTGTCAGAAGTGAAGGACACGGTGCGCCGCCAGCCCCTGCTGCACCACCTGTGCGCCCTGGTGCTGCAGGCCCGGCCTGACTCCTCCGACCTGTACTCGGAGATCCCCGCCCTGGCCCGCTGCGCCAAG
Seq C2 exon
GTGGACTTTGAGCAGCTGACTGAGAACCTGGGGCAGCTGGAGCGCCGGAGCCGGGCAGCTGAAGACAGCCTGCGGAGCCTGACCAAGCATGATCTGGCTCCAGCCCTGCGTGCCCGCCTCACCCACTTCCTGGTGCACTGTACCCGCCGTGTTGCCATGCTGAGGGTCGTACACCGCCGTGTCTGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032427_MULTIEX1-11/15=10-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(10.5=100)
A:
PF0218118=FH2=FE(14.2=100)
C2:
PF0218118=FH2=FE(16.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGACCTGAAAGTGGGCAT
R:
GGTACAGTGCACCAGGAAGTG
Band lengths:
247-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development