DreEX0032772 @ danRer10
Exon Skipping
Gene
ENSDARG00000051768 | fhod1
Description
formin homology 2 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-110623-4]
Coordinates
chr7:34335703-34338712:+
Coord C1 exon
chr7:34335703-34335822
Coord A exon
chr7:34338068-34338229
Coord C2 exon
chr7:34338522-34338712
Length
162 bp
Sequences
Splice sites
3' ss Seq
GTTTCTCATCTGTATCGCAGGCG
3' ss Score
7.95
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GAGATTGCAGAGCCTCTTTTTGACCTGAAGCAGGGCATGGAACAACTCGCCAAGAACAAAACCTTCAAACGTATCCTAGCAACACTACTGGCCATTGGCAACTTCCTAAACAGCTCAAGG
Seq A exon
GCGAAGGGCTTTGAGCTCGGTTATCTGGAGAAGGTGACCGAGGTGAAGGACACTGTGCACAGACAGTCTCTGCTTCATCATACCTGCAATTTTGTGGTGGAAAATTACCCAGACACGACTGACCTTTACTCTGAGATCCCTGCTATCACACGCTCTGCTAAA
Seq C2 exon
GTGGAGTTTGAGCAATTATCTGAAAACCTGATTCAGTTGGAAAGAAAATGCAAAACGTCCTGGGACAACCTTAAAGTTGTGGCCAAGCATGAAACTAAACCCAACTTAAAAAACAAAATGACTGAATTCCTGAAAGACTGTACTGAAAGAATCATCATCCTGAAAGTAGTGCACAGACGCATTATTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051768-'22-25,'22-24,23-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(10.6=100)
A:
PF0218118=FH2=FE(14.4=100)
C2:
PF0218118=FH2=FE(17.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCGCCAAGAACAAAACCTTCA
R:
TGCGTCTGTGCACTACTTTCA
Band lengths:
257-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]