BtaEX0014627 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032427 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr18:34981015-34983403:-
Coord C1 exon
chr18:34983260-34983403
Coord A exon
chr18:34982988-34983121
Coord C2 exon
chr18:34981015-34981240
Length
134 bp
Sequences
Splice sites
3' ss Seq
TCTGGGCCCAACTCTGCTAGAAC
3' ss Score
2.83
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
ACTCTGGCAGCCCTCCCGGACCAGGACTCCTTCTACGACGTGACGGATGCACTGGAGCAGCAGGGCATGGAAGCACTGGTCCAGCACCACTTGGGCAAGGCGGGCACTGACGTCGACCTGCGAGCCCAACTTGTACTCTATGAG
Seq A exon
AACGCCCTGCGGTTGGAGGATGGAGACCTCGAAGAAGCCGTCACAGGTGGGCGGCGCACCACCCGCCGAAAACCTTCCTCAGAGGAGGGCAAGAGGAGCCGCCGATCTCTAGAAGTGCGCTCCCCAGAGCCTGG
Seq C2 exon
AGCCCGGTTCCTGGAGAATGTAGCAGCAGCAGAAACAGAAAAGCAGGCTGCGCTGGCCCAGGGCCGGGCAGAAACATTGGCCGGTGCCATGCCGGATGATATGGACGGGTGTCCAGGTGAGTGGGTAGGTGGGCAGTATCCACCCACGTTGCCCTGTTGCTCTAGAGAAGACATGACACTGACAGCTGCTTCCCTTTGTCTAGACACCCGAGAATCAAGGTACTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032427_MULTIEX1-2/15=1-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=0.844 C2=0.775
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTACGACGTGACGGATGC
R:
ATACTGCCCACCTACCCACTC
Band lengths:
254-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development