DreEX6006123 @ danRer10
Exon Skipping
Gene
ENSDARG00000051768 | fhod1
Description
formin homology 2 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-110623-4]
Coordinates
chr7:34313192-34315654:+
Coord C1 exon
chr7:34313192-34313335
Coord A exon
chr7:34314516-34314708
Coord C2 exon
chr7:34315483-34315654
Length
193 bp
Sequences
Splice sites
3' ss Seq
TTTTGCATGTATTATTGCAGAAA
3' ss Score
7.94
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
ACTCTGGCAGCACTTCCTGATCAGGACTCATTTTATGATGTGACAGACTGTTTGGAGCAGCTAGAAATGGAAAGCATCATCCAGAAACACATGACTAGCAGCGGCACTGAGGGTGACCTTAAACAGCAGTTCACTATTTATGAG
Seq A exon
AAAGCCCTAAAGTGTGAAGATGGAGAGATGGATGAAACGGCACCAAATGTGCGTAAAGACAGAAGGAAACTGACACCCAGTGAGCAGGAGGGCAGGAAGAGCCGGCGATCGTCTTCTCACAATCTTACAGATAGCTCCTTTCGACCAGCCTCCCCGACTGTTTCAGTCTCTTCTAACAGTCCAACCCCATCAG
Seq C2 exon
AGGTGACCCGCACAGCCTCTCCTCAGCTGTCAGACTCCTCAAGTTCTCCTGCTCCTGGCAGTCCTGTGTTGACCAGTCCCTCCTCAACCACCTCTGGCTCCCGAACTCCACCTCTGGCTCTGGTGACTAATGGAGCAGAGTCTGCTGCCGTCCCACAGCAACAACACAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051768-'9-12,'9-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=0.954 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGCAGCACTTCCTGATC
R:
GAGCCAGAGGTGGTTGAGGAG
Band lengths:
243-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]