BtaEX0015099 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013072 | FUBP3
Description
Bos taurus far upstream element (FUSE) binding protein 3 (FUBP3), mRNA. [Source:RefSeq mRNA;Acc:NM_001101217]
Coordinates
chr11:100930881-100933109:+
Coord C1 exon
chr11:100930881-100930938
Coord A exon
chr11:100932561-100932622
Coord C2 exon
chr11:100932947-100933109
Length
62 bp
Sequences
Splice sites
3' ss Seq
TTTAACCACCGTCCGTTGAGCGT
3' ss Score
-5.55
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
AGAGTTCTGGGATTCCAGAGAGGCCCTGTGTACTTACCGGAACCCCAGAAAGTATTGA
Seq A exon
CGTGTGCTCTGTGAGGAGGGTTGTGCTGGACTGGGGCGCAGAGAGACGCAGGGGGATCAAAG
Seq C2 exon
ACAAGCCAAACGGCTCCTGGGGCAGATCGTGGACCGCTGTCGGAACGGACCCGGCTTTCACAATGATGTTGACGGCAACAGCACGGTCCAGGAGATTCCCATCCCAGCGTCGAAAGTGGGTCTGGTCATCGGCAAAGGCGGGGAGACGATAAAGCAGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013072_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.091 C2=0.225
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(30.2=100)
A:
PF0001324=KH_1=PD(6.6=18.2)
C2:
PF0001324=KH_1=PD(9.5=10.9),PF0001324=KH_1=PU(38.5=45.5)
Main Inclusion Isoform:
ENSBTAT00000017383fB2879
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGCCCTGTGTACTTACCG
R:
TGGGATGGGAATCTCCTGGAC
Band lengths:
146-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development