BtaEX0015098 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013072 | FUBP3
Description
Bos taurus far upstream element (FUSE) binding protein 3 (FUBP3), mRNA. [Source:RefSeq mRNA;Acc:NM_001101217]
Coordinates
chr11:100929416-100933109:+
Coord C1 exon
chr11:100929416-100929487
Coord A exon
chr11:100930881-100930938
Coord C2 exon
chr11:100932947-100933109
Length
58 bp
Sequences
Splice sites
3' ss Seq
CTTCTTGATTCTTCTTGTAGAGA
3' ss Score
7.54
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
TTATCGGCCGGGGAGGTGAGCAGATCTCGCGGATTCAAGCAGAATCTGGTTGCAAAATTCAGATTGCGTCAG
Seq A exon
AGAGTTCTGGGATTCCAGAGAGGCCCTGTGTACTTACCGGAACCCCAGAAAGTATTGA
Seq C2 exon
ACAAGCCAAACGGCTCCTGGGGCAGATCGTGGACCGCTGTCGGAACGGACCCGGCTTTCACAATGATGTTGACGGCAACAGCACGGTCCAGGAGATTCCCATCCCAGCGTCGAAAGTGGGTCTGGTCATCGGCAAAGGCGGGGAGACGATAAAGCAGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013072_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.333 C2=0.225
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(38.1=100)
A:
PF0001324=KH_1=FE(30.2=100)
C2:
PF0001324=KH_1=PD(9.5=10.9),PF0001324=KH_1=PU(38.5=45.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCTCGCGGATTCAAGCAG
R:
AATCTCCTGGACCGTGCTGTT
Band lengths:
148-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development