HsaEX0026574 @ hg38
Exon Skipping
Gene
ENSG00000107164 | FUBP3
Description
far upstream element binding protein 3 [Source:HGNC Symbol;Acc:HGNC:4005]
Coordinates
chr9:130612956-130616517:+
Coord C1 exon
chr9:130612956-130613027
Coord A exon
chr9:130614288-130614345
Coord C2 exon
chr9:130616355-130616517
Length
58 bp
Sequences
Splice sites
3' ss Seq
CTTCTTGATTCTTCTTATAGAGA
3' ss Score
7.11
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
TTATCGGCAGGGGAGGTGAGCAGATTTCACGGATTCAAGCAGAATCTGGTTGCAAAATTCAGATTGCTTCAG
Seq A exon
AGAGTTCTGGGATTCCAGAGAGGCCCTGTGTACTTACCGGAACCCCAGAAAGTATTGA
Seq C2 exon
ACAAGCCAAACGGCTCCTGGGACAGATTGTGGACCGCTGTCGAAATGGACCTGGCTTTCATAATGACATAGACAGCAACAGCACAATCCAGGAGATTCTCATTCCCGCATCTAAAGTGGGTCTGGTCATCGGCAGAGGAGGGGAAACAATCAAGCAGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107164-'21-28,'21-24,22-28
Average complexity
S
Mappability confidence:
89%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.040 A=0.400 C2=0.076
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(38.1=100)
A:
PF0001324=KH_1=FE(30.2=100)
C2:
PF0001324=KH_1=PD(9.5=10.9),PF0001324=KH_1=PU(38.5=45.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGTGAGCAGATTTCACGG
R:
TGTGCTGTTGCTGTCTATGTCA
Band lengths:
146-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development