DreEX6008862 @ danRer10
Exon Skipping
Gene
ENSDARG00000086896 | FUBP3
Description
far upstream element (FUSE) binding protein 3 [Source:HGNC Symbol;Acc:HGNC:4005]
Coordinates
chr5:858633-859626:+
Coord C1 exon
chr5:858633-858704
Coord A exon
chr5:858905-858962
Coord C2 exon
chr5:859464-859626
Length
58 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTTTTCCGTCCACAGACA
3' ss Score
12.56
5' ss Seq
CGAGTAAGA
5' ss Score
6.87
Exon sequences
Seq C1 exon
TTATTGGACGGGGCGGCGAACAGATCACCAGAATTCAGCTGGAATCCAACTGCAAGATCCAGATCGCTGCTG
Seq A exon
ACAGCGGTGGTATGATGGATCGGCCCTGCACCCTGACCGGGACCCCAGAGAGTATCGA
Seq C2 exon
GCAGGCTAAGCGTCTGCTGGGTCAGATAGTGGACCGCTGTCGGAACGGGCCGGGTTTCCACAGTCAGATGGACGGCAGCAGCGCGGTGCAGGAGATCCTGATCCCGGCCAGTAAAGTGGGCCTGGTCATCGGGAAAGGAGGAGACACCATTAAACAACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086896-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.450 C2=0.018
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(38.1=100)
A:
PF0001324=KH_1=FE(30.2=100)
C2:
PF0001324=KH_1=PD(9.5=10.9),PF0001324=KH_1=PU(39.7=45.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCAAGATCCAGATCGCTG
R:
TTTACTGGCCGGGATCAGGAT
Band lengths:
139-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]